Hb_001828_150

Information

Type -
Description -
Location Contig1828: 212787-217543
Sequence    

Annotation

kegg
ID rcu:RCOM_1679010
description cytochrome C1, putative
nr
ID XP_012070956.1
description PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
swissprot
ID P25076
description Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1
trembl
ID A0A067LCX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10166 PE=4 SV=1
Gene Ontology
ID GO:0009055
description cytochrome c1- heme mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17827: 212869-217470 , PASA_asmbl_17830: 218132-219182 , PASA_asmbl_17831: 218093-219372
cDNA
(Sanger)
(ID:Location)		 010_L13.ab1: 213510-217360 , 012_F07.ab1: 214564-217358

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_150 0.0 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
2 Hb_001218_030 0.0583230378 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
3 Hb_006573_190 0.0610115034 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
4 Hb_008841_020 0.0618942921 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
5 Hb_000853_150 0.0686766712 - - Fumarase 1 isoform 2 [Theobroma cacao]
6 Hb_121729_010 0.069104689 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000381_120 0.0691298512 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
8 Hb_000200_020 0.0701579459 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
9 Hb_000920_200 0.0720281886 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
10 Hb_000003_230 0.0725148719 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
11 Hb_031862_100 0.0727120143 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001189_070 0.0748423607 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
13 Hb_001489_080 0.0748481297 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_004545_110 0.075422019 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
15 Hb_001123_040 0.0767181647 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
16 Hb_014720_110 0.0775168425 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
17 Hb_000599_250 0.0810263158 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
18 Hb_002014_020 0.0811589567 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
19 Hb_007676_080 0.0813347591 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
20 Hb_001314_050 0.0822891026 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001828_150 Hb_001828_150 Hb_001218_030 Hb_001218_030 Hb_001828_150--Hb_001218_030 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_006573_190--Hb_000390_300 Hb_001189_070 Hb_001189_070 Hb_008841_020--Hb_001189_070 Hb_000599_250 Hb_000599_250 Hb_008841_020--Hb_000599_250 Hb_008841_020--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_008841_020--Hb_006478_020 Hb_001489_080 Hb_001489_080 Hb_008841_020--Hb_001489_080 Hb_003058_120 Hb_003058_120 Hb_000853_150--Hb_003058_120 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_001472_100 Hb_001472_100 Hb_121729_010--Hb_001472_100 Hb_009898_050 Hb_009898_050 Hb_121729_010--Hb_009898_050 Hb_000110_310 Hb_000110_310 Hb_121729_010--Hb_000110_310 Hb_121729_010--Hb_001189_070 Hb_008616_050 Hb_008616_050 Hb_121729_010--Hb_008616_050 Hb_000329_060 Hb_000329_060 Hb_000381_120--Hb_000329_060 Hb_000556_120 Hb_000556_120 Hb_000381_120--Hb_000556_120 Hb_000640_170 Hb_000640_170 Hb_000381_120--Hb_000640_170 Hb_000417_130 Hb_000417_130 Hb_000381_120--Hb_000417_130 Hb_000381_120--Hb_009898_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3091 16.0981 45.548 47.6784 28.6126 32.0351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4294 53.2806 48.4112 52.6103 41.5291

CAGE analysis