Hb_000640_170

Information

Type -
Description -
Location Contig640: 131889-135893
Sequence    

Annotation

kegg
ID rcu:RCOM_1346940
description protein binding protein, putative
nr
ID XP_012082909.1
description PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RND2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1346940 PE=4 SV=1
Gene Ontology
ID GO:0031011
description hit zinc -1-like conserved region isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52102: 131960-134328 , PASA_asmbl_52104: 135356-135605 , PASA_asmbl_52105: 134333-135688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_170 0.0 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
2 Hb_168978_030 0.0465790914 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
3 Hb_000035_470 0.0562853145 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
4 Hb_001599_040 0.0616829842 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
5 Hb_009898_050 0.0622545576 - - PREDICTED: beta-taxilin [Jatropha curcas]
6 Hb_000156_010 0.0636923526 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
7 Hb_026198_070 0.063990875 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
8 Hb_007390_010 0.0650236899 - - catalytic, putative [Ricinus communis]
9 Hb_001268_240 0.0663860715 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
10 Hb_006153_070 0.0675415349 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
11 Hb_001357_350 0.0682576518 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000417_130 0.0686365277 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
13 Hb_001946_400 0.0707211185 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
14 Hb_006831_140 0.0707736447 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_004319_080 0.0710855788 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
16 Hb_001279_150 0.0724151539 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
17 Hb_000381_120 0.0736987161 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
18 Hb_011037_030 0.0740188132 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
19 Hb_000521_120 0.074433531 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_063716_100 0.0745996296 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_170 Hb_000640_170 Hb_168978_030 Hb_168978_030 Hb_000640_170--Hb_168978_030 Hb_000035_470 Hb_000035_470 Hb_000640_170--Hb_000035_470 Hb_001599_040 Hb_001599_040 Hb_000640_170--Hb_001599_040 Hb_009898_050 Hb_009898_050 Hb_000640_170--Hb_009898_050 Hb_000156_010 Hb_000156_010 Hb_000640_170--Hb_000156_010 Hb_026198_070 Hb_026198_070 Hb_000640_170--Hb_026198_070 Hb_168978_030--Hb_000035_470 Hb_000617_180 Hb_000617_180 Hb_168978_030--Hb_000617_180 Hb_105328_020 Hb_105328_020 Hb_168978_030--Hb_105328_020 Hb_002044_150 Hb_002044_150 Hb_168978_030--Hb_002044_150 Hb_168978_030--Hb_000156_010 Hb_004319_080 Hb_004319_080 Hb_000035_470--Hb_004319_080 Hb_015807_050 Hb_015807_050 Hb_000035_470--Hb_015807_050 Hb_001021_150 Hb_001021_150 Hb_000035_470--Hb_001021_150 Hb_002073_190 Hb_002073_190 Hb_000035_470--Hb_002073_190 Hb_000976_140 Hb_000976_140 Hb_000035_470--Hb_000976_140 Hb_002303_070 Hb_002303_070 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_006153_070 Hb_006153_070 Hb_009898_050--Hb_006153_070 Hb_000110_310 Hb_000110_310 Hb_009898_050--Hb_000110_310 Hb_008616_050 Hb_008616_050 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_000579_120 Hb_000579_120 Hb_009898_050--Hb_000579_120 Hb_011037_030 Hb_011037_030 Hb_000156_010--Hb_011037_030 Hb_003750_050 Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_054865_150 Hb_054865_150 Hb_000156_010--Hb_054865_150 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_002110_190 Hb_002110_190 Hb_026198_070--Hb_002110_190 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4286 5.20508 8.60574 10.9704 8.5685 11.5502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3985 10.1786 7.45509 11.9828 9.33802

CAGE analysis