Hb_002044_150

Information

Type -
Description -
Location Contig2044: 148903-160798
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17120g
description POPTRDRAFT_899233; hypothetical protein
nr
ID XP_012084114.1
description PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
swissprot
ID F4JRF4
description A/G-specific adenine DNA glycosylase OS=Arabidopsis thaliana GN=MYH PE=3 SV=1
trembl
ID A0A067LD77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15038 PE=4 SV=1
Gene Ontology
ID GO:0005488
description a g-specific adenine dna glycosylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21011: 149074-158788 , PASA_asmbl_21012: 153456-153677 , PASA_asmbl_21013: 160153-160717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_150 0.0 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
2 Hb_007479_040 0.0554776411 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004254_090 0.0624645408 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
4 Hb_026198_070 0.0640765265 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
5 Hb_168978_030 0.0645729473 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
6 Hb_000207_050 0.0649908283 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
7 Hb_000138_100 0.0690699187 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
8 Hb_002600_150 0.0697810447 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
9 Hb_001205_120 0.0712025816 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
10 Hb_004846_220 0.0718687215 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
11 Hb_000254_090 0.0734428241 - - PREDICTED: la protein 2 [Jatropha curcas]
12 Hb_000617_180 0.0738957284 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
13 Hb_002496_010 0.0744587577 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
14 Hb_002169_050 0.0747881155 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
15 Hb_001473_180 0.077946936 - - glutathione reductase [Hevea brasiliensis]
16 Hb_001301_100 0.078123377 - - transporter, putative [Ricinus communis]
17 Hb_000028_180 0.0781794237 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
18 Hb_000028_480 0.0783989083 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
19 Hb_003994_150 0.0787931191 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
20 Hb_004619_030 0.0805765491 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002044_150 Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_002044_150--Hb_007479_040 Hb_004254_090 Hb_004254_090 Hb_002044_150--Hb_004254_090 Hb_026198_070 Hb_026198_070 Hb_002044_150--Hb_026198_070 Hb_168978_030 Hb_168978_030 Hb_002044_150--Hb_168978_030 Hb_000207_050 Hb_000207_050 Hb_002044_150--Hb_000207_050 Hb_000138_100 Hb_000138_100 Hb_002044_150--Hb_000138_100 Hb_002110_190 Hb_002110_190 Hb_007479_040--Hb_002110_190 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_007479_040--Hb_004254_090 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_004254_090--Hb_002518_260 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_026198_070--Hb_002110_190 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_026198_070--Hb_007479_040 Hb_168978_030--Hb_000640_170 Hb_000035_470 Hb_000035_470 Hb_168978_030--Hb_000035_470 Hb_000617_180 Hb_000617_180 Hb_168978_030--Hb_000617_180 Hb_105328_020 Hb_105328_020 Hb_168978_030--Hb_105328_020 Hb_000156_010 Hb_000156_010 Hb_168978_030--Hb_000156_010 Hb_000072_320 Hb_000072_320 Hb_000207_050--Hb_000072_320 Hb_002169_050 Hb_002169_050 Hb_000207_050--Hb_002169_050 Hb_005269_070 Hb_005269_070 Hb_000207_050--Hb_005269_070 Hb_001489_080 Hb_001489_080 Hb_000207_050--Hb_001489_080 Hb_029510_050 Hb_029510_050 Hb_000207_050--Hb_029510_050 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.13599 2.92346 4.6733 4.90947 5.41884 6.06108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95283 4.39701 6.44169 7.68477 5.41811

CAGE analysis