Hb_002592_060

Information

Type -
Description -
Location Contig2592: 98735-106321
Sequence    

Annotation

kegg
ID rcu:RCOM_1119420
description hypothetical protein
nr
ID XP_002525339.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH70
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1119420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26891: 98059-99601 , PASA_asmbl_26892: 98082-98769 , PASA_asmbl_26893: 101469-102803 , PASA_asmbl_26894: 105042-105401 , PASA_asmbl_26895: 105515-105663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002592_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001021_150 0.0465796879 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
3 Hb_004846_220 0.0546750887 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
4 Hb_002263_020 0.056636119 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_004254_090 0.0567516018 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
6 Hb_000317_050 0.0620873455 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
7 Hb_006483_110 0.0638415109 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
8 Hb_001442_040 0.0638767489 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
9 Hb_000138_100 0.0657365749 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
10 Hb_000708_030 0.067371229 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
11 Hb_004963_030 0.067442248 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_005000_170 0.0674645267 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
13 Hb_005867_070 0.0677923954 - - DNA binding protein, putative [Ricinus communis]
14 Hb_123915_040 0.0682064311 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
15 Hb_000035_470 0.0693315195 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
16 Hb_156279_020 0.0705275845 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_000165_040 0.0720592799 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
18 Hb_003847_130 0.0721156163 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
19 Hb_000347_430 0.0727129792 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
20 Hb_001946_400 0.0736894719 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002592_060 Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_002592_060--Hb_001021_150 Hb_004846_220 Hb_004846_220 Hb_002592_060--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_002592_060--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_000138_100 Hb_000138_100 Hb_004846_220--Hb_000138_100 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_004846_220--Hb_001021_150 Hb_004846_220--Hb_004254_090 Hb_004846_220--Hb_006483_110 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080 Hb_004254_090--Hb_000138_100 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_002518_260 Hb_002518_260 Hb_004254_090--Hb_002518_260 Hb_001546_080 Hb_001546_080 Hb_000317_050--Hb_001546_080 Hb_001307_220 Hb_001307_220 Hb_000317_050--Hb_001307_220 Hb_000329_710 Hb_000329_710 Hb_000317_050--Hb_000329_710 Hb_000318_250 Hb_000318_250 Hb_000317_050--Hb_000318_250 Hb_000317_050--Hb_002263_020 Hb_006483_110--Hb_007426_110 Hb_028960_020 Hb_028960_020 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_006483_110--Hb_041290_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06895 1.86453 2.77755 2.01849 2.74635 2.82955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.77639 2.67389 2.22129 2.6626 3.28851

CAGE analysis