Hb_006483_110

Information

Type -
Description -
Location Contig6483: 94409-99485
Sequence    

Annotation

kegg
ID rcu:RCOM_1408480
description RNA-binding protein, putative
nr
ID XP_012079235.1
description PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
swissprot
ID O94432
description Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=3 SV=1
trembl
ID A0A067KAA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12399 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52451: 94408-99479 , PASA_asmbl_52452: 94439-94606
cDNA
(Sanger)
(ID:Location)		 012_L09.ab1: 94408-97540

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_110 0.0 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
2 Hb_007426_110 0.0447074082 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
3 Hb_028960_020 0.0557182256 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
4 Hb_015807_050 0.0573255095 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
5 Hb_041290_020 0.0582407143 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
6 Hb_002263_020 0.0614548565 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_109980_010 0.0618525502 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
8 Hb_004846_220 0.0625223822 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
9 Hb_002592_060 0.0638415109 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000174_170 0.0652582254 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
11 Hb_005867_070 0.0661992942 - - DNA binding protein, putative [Ricinus communis]
12 Hb_007765_100 0.0671426737 - - PREDICTED: helicase SKI2W [Jatropha curcas]
13 Hb_002218_090 0.0673398167 - - Poly(rC)-binding protein, putative [Ricinus communis]
14 Hb_000567_070 0.0676030229 - - autophagy protein, putative [Ricinus communis]
15 Hb_001348_080 0.0680905168 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
16 Hb_000165_040 0.0714787489 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
17 Hb_001021_150 0.0717953294 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
18 Hb_000363_310 0.0722419557 - - DNA topoisomerase type I, putative [Ricinus communis]
19 Hb_008959_010 0.072345372 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000406_200 0.0724859368 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_006483_110 Hb_006483_110 Hb_007426_110 Hb_007426_110 Hb_006483_110--Hb_007426_110 Hb_028960_020 Hb_028960_020 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_002263_020 Hb_002263_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_000313_220 Hb_000313_220 Hb_015807_050--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_015807_050--Hb_000976_140 Hb_015807_050--Hb_109980_010 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_002849_130 Hb_002849_130 Hb_015807_050--Hb_002849_130 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070 Hb_041290_020--Hb_004846_220 Hb_004109_080 Hb_004109_080 Hb_041290_020--Hb_004109_080 Hb_041290_020--Hb_028960_020 Hb_000138_100 Hb_000138_100 Hb_041290_020--Hb_000138_100 Hb_000406_200 Hb_000406_200 Hb_041290_020--Hb_000406_200 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_002263_020--Hb_004109_080 Hb_006501_090 Hb_006501_090 Hb_109980_010--Hb_006501_090 Hb_109980_010--Hb_001655_030 Hb_007657_010 Hb_007657_010 Hb_109980_010--Hb_007657_010 Hb_000935_010 Hb_000935_010 Hb_109980_010--Hb_000935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6875 24.8509 38.1463 26.7955 31.5928 36.3452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0158 28.7453 26.2274 36.4103 44.2414

CAGE analysis