Hb_002205_030

Information

Type -
Description -
Location Contig2205: 42718-49535
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08450g
description POPTRDRAFT_249183; hypothetical protein
nr
ID XP_012091162.1
description PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
swissprot
ID Q8VXZ7
description Alpha-galactosidase 3 OS=Arabidopsis thaliana GN=AGAL3 PE=1 SV=1
trembl
ID A0A067JNU2
description Alpha-galactosidase OS=Jatropha curcas GN=JCGZ_03336 PE=3 SV=1
Gene Ontology
ID GO:0005773
description alpha-galactosidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22702: 46914-47038 , PASA_asmbl_22703: 42789-49447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_030 0.0 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
2 Hb_057688_010 0.0565528196 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
3 Hb_028960_020 0.0581327755 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
4 Hb_000797_040 0.0608043644 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
5 Hb_003517_040 0.0652067534 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
6 Hb_000665_120 0.0656827601 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
7 Hb_001377_190 0.070838436 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
8 Hb_007413_010 0.0710786828 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
9 Hb_001089_030 0.0712608884 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
10 Hb_001925_060 0.0720846345 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
11 Hb_005730_040 0.0745965753 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
12 Hb_004310_140 0.0749304655 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_021374_010 0.0749345049 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
14 Hb_000749_010 0.0749786127 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
15 Hb_001789_110 0.0761767985 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001862_130 0.0770430589 - - Protein FRIGIDA, putative [Ricinus communis]
17 Hb_000976_140 0.0779316401 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
18 Hb_000227_220 0.0781277154 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
19 Hb_000347_430 0.0784076503 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
20 Hb_005276_200 0.0791399366 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002205_030 Hb_002205_030 Hb_057688_010 Hb_057688_010 Hb_002205_030--Hb_057688_010 Hb_028960_020 Hb_028960_020 Hb_002205_030--Hb_028960_020 Hb_000797_040 Hb_000797_040 Hb_002205_030--Hb_000797_040 Hb_003517_040 Hb_003517_040 Hb_002205_030--Hb_003517_040 Hb_000665_120 Hb_000665_120 Hb_002205_030--Hb_000665_120 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190 Hb_000710_040 Hb_000710_040 Hb_057688_010--Hb_000710_040 Hb_001089_030 Hb_001089_030 Hb_057688_010--Hb_001089_030 Hb_001720_040 Hb_001720_040 Hb_057688_010--Hb_001720_040 Hb_000803_270 Hb_000803_270 Hb_057688_010--Hb_000803_270 Hb_183510_020 Hb_183510_020 Hb_057688_010--Hb_183510_020 Hb_007426_110 Hb_007426_110 Hb_028960_020--Hb_007426_110 Hb_006483_110 Hb_006483_110 Hb_028960_020--Hb_006483_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_000797_040--Hb_000665_120 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_002218_090 Hb_002218_090 Hb_000797_040--Hb_002218_090 Hb_000797_040--Hb_007426_110 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_007765_100 Hb_007765_100 Hb_000665_120--Hb_007765_100 Hb_000665_120--Hb_028960_020 Hb_008059_010 Hb_008059_010 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_007413_010 Hb_007413_010 Hb_001377_190--Hb_007413_010 Hb_000189_600 Hb_000189_600 Hb_001377_190--Hb_000189_600 Hb_006913_020 Hb_006913_020 Hb_001377_190--Hb_006913_020 Hb_000363_310 Hb_000363_310 Hb_001377_190--Hb_000363_310 Hb_000749_010 Hb_000749_010 Hb_001377_190--Hb_000749_010 Hb_001925_060 Hb_001925_060 Hb_001377_190--Hb_001925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54104 5.15232 5.6471 4.91517 4.3713 5.08168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.79208 3.57412 2.42491 5.42091 7.41653

CAGE analysis