Hb_183510_020

Information

Type -
Description -
Location Contig183510: 9395-19026
Sequence    

Annotation

kegg
ID rcu:RCOM_0522630
description coated vesicle membrane protein, putative (EC:2.4.1.12)
nr
ID XP_002522778.1
description coated vesicle membrane protein, putative [Ricinus communis]
swissprot
ID Q8VZK9
description Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=2 SV=1
trembl
ID B9S9V9
description Coated vesicle membrane protein, putative OS=Ricinus communis GN=RCOM_0522630 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase-like protein e1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17933: 9182-13147 , PASA_asmbl_17934: 9461-13170 , PASA_asmbl_17935: 12699-12858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183510_020 0.0 - - coated vesicle membrane protein, putative [Ricinus communis]
2 Hb_000025_690 0.0572487597 - - spliceosome associated protein, putative [Ricinus communis]
3 Hb_005867_070 0.0577318751 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000011_100 0.0616784267 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
5 Hb_000006_040 0.0619825211 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_000710_040 0.0632777421 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
7 Hb_001301_150 0.0636891615 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
8 Hb_000120_280 0.0642037458 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
9 Hb_000189_600 0.0642234543 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
10 Hb_001009_280 0.0646614755 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
11 Hb_002889_010 0.0676688342 - - ubx domain-containing, putative [Ricinus communis]
12 Hb_000406_200 0.0688017122 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
13 Hb_000803_270 0.0690183447 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
14 Hb_000138_100 0.0699014016 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
15 Hb_007894_150 0.0699077608 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
16 Hb_003517_040 0.0699114511 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
17 Hb_000363_310 0.0700417141 - - DNA topoisomerase type I, putative [Ricinus communis]
18 Hb_010921_050 0.0702434151 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
19 Hb_028960_020 0.0702899854 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
20 Hb_005000_170 0.0704105302 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]

Gene co-expression network

sample Hb_183510_020 Hb_183510_020 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150 Hb_001226_150 Hb_001226_150 Hb_000025_690--Hb_001226_150 Hb_000025_690--Hb_005867_070 Hb_000665_120 Hb_000665_120 Hb_000025_690--Hb_000665_120 Hb_000174_170 Hb_000174_170 Hb_000025_690--Hb_000174_170 Hb_007765_100 Hb_007765_100 Hb_000025_690--Hb_007765_100 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130 Hb_000006_040--Hb_000165_040 Hb_004254_090 Hb_004254_090 Hb_000006_040--Hb_004254_090 Hb_001235_150 Hb_001235_150 Hb_000006_040--Hb_001235_150 Hb_033642_090 Hb_033642_090 Hb_000006_040--Hb_033642_090 Hb_000006_040--Hb_005867_070 Hb_001089_030 Hb_001089_030 Hb_000710_040--Hb_001089_030 Hb_000227_220 Hb_000227_220 Hb_000710_040--Hb_000227_220 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_000710_040--Hb_001430_080 Hb_003883_060 Hb_003883_060 Hb_001301_150--Hb_003883_060 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_004319_080 Hb_004319_080 Hb_001301_150--Hb_004319_080 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.57687 9.9932 11.2604 8.56896 9.70517 7.7746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8921 8.05566 6.9317 13.2612 10.7329

CAGE analysis