Hb_001089_030

Information

Type -
Description -
Location Contig1089: 19377-23274
Sequence    

Annotation

kegg
ID rcu:RCOM_0708790
description zinc ion binding protein, putative
nr
ID XP_012077124.1
description PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
swissprot
ID Q9URW6
description SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1
trembl
ID A0A067KCV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07543 PE=4 SV=1
Gene Ontology
ID GO:0046872
description sh3 domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02697: 19455-23386
cDNA
(Sanger)
(ID:Location)		 001_M02.ab1: 19464-20765

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_030 0.0 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
2 Hb_000710_040 0.0570552817 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
3 Hb_007590_020 0.0584005894 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
4 Hb_000227_220 0.0609112783 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
5 Hb_001720_040 0.0610647007 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004020_040 0.0647039998 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
7 Hb_004837_180 0.0647549213 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
8 Hb_005867_070 0.0654802044 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001225_040 0.0660039446 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
10 Hb_057688_010 0.0693435528 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
11 Hb_000749_010 0.0700562639 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
12 Hb_021374_010 0.0701892071 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
13 Hb_001922_150 0.0705276339 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
14 Hb_002205_030 0.0712608884 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
15 Hb_000976_140 0.07153882 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
16 Hb_005730_040 0.0718555047 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
17 Hb_004236_050 0.0736311454 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
18 Hb_000645_170 0.0742523703 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002986_100 0.0743414675 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
20 Hb_000189_600 0.0745035245 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001089_030 Hb_001089_030 Hb_000710_040 Hb_000710_040 Hb_001089_030--Hb_000710_040 Hb_007590_020 Hb_007590_020 Hb_001089_030--Hb_007590_020 Hb_000227_220 Hb_000227_220 Hb_001089_030--Hb_000227_220 Hb_001720_040 Hb_001720_040 Hb_001089_030--Hb_001720_040 Hb_004020_040 Hb_004020_040 Hb_001089_030--Hb_004020_040 Hb_004837_180 Hb_004837_180 Hb_001089_030--Hb_004837_180 Hb_000011_100 Hb_000011_100 Hb_000710_040--Hb_000011_100 Hb_000710_040--Hb_000227_220 Hb_183510_020 Hb_183510_020 Hb_000710_040--Hb_183510_020 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_001430_080 Hb_001430_080 Hb_000710_040--Hb_001430_080 Hb_007590_020--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_007590_020--Hb_005867_070 Hb_004236_050 Hb_004236_050 Hb_007590_020--Hb_004236_050 Hb_005730_040 Hb_005730_040 Hb_007590_020--Hb_005730_040 Hb_001225_040 Hb_001225_040 Hb_007590_020--Hb_001225_040 Hb_009976_020 Hb_009976_020 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_003943_010 Hb_003943_010 Hb_000227_220--Hb_003943_010 Hb_000227_220--Hb_004020_040 Hb_002986_100 Hb_002986_100 Hb_001720_040--Hb_002986_100 Hb_001720_040--Hb_005867_070 Hb_001720_040--Hb_004837_180 Hb_001720_040--Hb_000710_040 Hb_001720_040--Hb_007590_020 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_001377_310 Hb_001377_310 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150 Hb_004837_180--Hb_005867_070 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004837_180--Hb_004236_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1189 37.0247 30.5771 26.6324 27.0064 30.5655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.332 28.3154 12.8068 26.1497 34.9974

CAGE analysis