Hb_009976_020

Information

Type transcription factor
Description TF Family: mTERF
Location Contig9976: 9652-10800
Sequence    

Annotation

kegg
ID rcu:RCOM_0621880
description hypothetical protein
nr
ID XP_012068749.1
description PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L028
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64900: 9907-10397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009976_020 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
2 Hb_011231_020 0.0534874735 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
3 Hb_012760_100 0.0536016518 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
4 Hb_001814_030 0.0549219171 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
5 Hb_000227_220 0.0559397827 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
6 Hb_003734_010 0.0567953495 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
7 Hb_001062_010 0.0584470478 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
8 Hb_008484_060 0.060314854 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
9 Hb_001655_030 0.0695836658 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
10 Hb_007426_110 0.0701772507 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
11 Hb_004182_050 0.0711645367 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
12 Hb_000563_130 0.0720284646 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
13 Hb_056691_060 0.0727440768 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
14 Hb_001343_040 0.0730835668 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
15 Hb_159558_010 0.0742947706 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
16 Hb_000830_030 0.0748398563 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
17 Hb_003913_070 0.0757142727 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
18 Hb_005402_040 0.0769525393 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
19 Hb_002311_290 0.0771002695 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
20 Hb_003411_040 0.0773654287 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_009976_020 Hb_009976_020 Hb_011231_020 Hb_011231_020 Hb_009976_020--Hb_011231_020 Hb_012760_100 Hb_012760_100 Hb_009976_020--Hb_012760_100 Hb_001814_030 Hb_001814_030 Hb_009976_020--Hb_001814_030 Hb_000227_220 Hb_000227_220 Hb_009976_020--Hb_000227_220 Hb_003734_010 Hb_003734_010 Hb_009976_020--Hb_003734_010 Hb_001062_010 Hb_001062_010 Hb_009976_020--Hb_001062_010 Hb_001655_030 Hb_001655_030 Hb_011231_020--Hb_001655_030 Hb_011231_020--Hb_001814_030 Hb_002890_130 Hb_002890_130 Hb_011231_020--Hb_002890_130 Hb_011231_020--Hb_003734_010 Hb_008484_060 Hb_008484_060 Hb_011231_020--Hb_008484_060 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_000227_220--Hb_001814_030 Hb_000710_040 Hb_000710_040 Hb_000227_220--Hb_000710_040 Hb_003943_010 Hb_003943_010 Hb_000227_220--Hb_003943_010 Hb_001089_030 Hb_001089_030 Hb_000227_220--Hb_001089_030 Hb_004020_040 Hb_004020_040 Hb_000227_220--Hb_004020_040 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_003734_010--Hb_001814_030 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_000900_030 Hb_000900_030 Hb_001062_010--Hb_000900_030 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002311_290 Hb_002311_290 Hb_001062_010--Hb_002311_290 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_009175_020 Hb_009175_020 Hb_001062_010--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.13859 5.03257 3.95485 4.28511 5.46245 7.03649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73562 3.9674 3.43216 6.28161 6.38562

CAGE analysis