Hb_001343_040

Information

Type -
Description -
Location Contig1343: 31746-39642
Sequence    

Annotation

kegg
ID pop:POPTR_0019s15350g
description POPTRDRAFT_665895; hypothetical protein
nr
ID XP_012077773.1
description PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
swissprot
ID Q16NZ8
description MAU2 chromatid cohesion factor homolog OS=Aedes aegypti GN=AAEL011819 PE=3 SV=1
trembl
ID A0A067LB85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17274 PE=4 SV=1
Gene Ontology
ID GO:0005515
description mau2 chromatid cohesion factor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09735: 31756-36889 , PASA_asmbl_09736: 37558-38334 , PASA_asmbl_09737: 38345-39597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001343_040 0.0 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
2 Hb_002815_030 0.0459409893 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
3 Hb_000613_050 0.0488120585 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
4 Hb_000592_030 0.0577399241 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
5 Hb_000395_070 0.0620426129 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
6 Hb_001814_030 0.0620680256 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
7 Hb_012395_140 0.0621314175 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
8 Hb_001062_010 0.0623601552 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
9 Hb_000740_100 0.0643508405 - - calpain, putative [Ricinus communis]
10 Hb_001195_320 0.064406705 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
11 Hb_000579_230 0.0660238932 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
12 Hb_009175_020 0.0661604518 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
13 Hb_002329_040 0.0663779817 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
14 Hb_000008_290 0.0672687148 - - PREDICTED: protein SAND [Jatropha curcas]
15 Hb_007123_030 0.0677695347 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
16 Hb_009270_020 0.0696214075 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
17 Hb_056691_060 0.0710839946 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
18 Hb_001449_040 0.0715718942 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
19 Hb_001199_100 0.0719098146 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
20 Hb_004182_050 0.0719410812 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001343_040 Hb_001343_040 Hb_002815_030 Hb_002815_030 Hb_001343_040--Hb_002815_030 Hb_000613_050 Hb_000613_050 Hb_001343_040--Hb_000613_050 Hb_000592_030 Hb_000592_030 Hb_001343_040--Hb_000592_030 Hb_000395_070 Hb_000395_070 Hb_001343_040--Hb_000395_070 Hb_001814_030 Hb_001814_030 Hb_001343_040--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_001343_040--Hb_012395_140 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_002815_030--Hb_012395_140 Hb_002815_030--Hb_000395_070 Hb_002815_030--Hb_000592_030 Hb_000613_050--Hb_000592_030 Hb_000613_050--Hb_000008_290 Hb_002213_070 Hb_002213_070 Hb_000613_050--Hb_002213_070 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_000613_050--Hb_002815_030 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000395_070--Hb_012395_140 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_000395_070--Hb_000579_230 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_001814_030--Hb_020378_030 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.60814 9.6412 5.47809 8.06695 11.0411 12.7369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.91248 5.47321 7.00311 12.3009 9.89706

CAGE analysis