Hb_004586_220

Information

Type -
Description -
Location Contig4586: 244492-260095
Sequence    

Annotation

kegg
ID rcu:RCOM_1038950
description WD and tetratricopeptide repeat protein, putative
nr
ID XP_012067963.1
description PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
swissprot
ID Q80ZK9
description WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1
trembl
ID A0A067LAC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15862 PE=4 SV=1
Gene Ontology
ID GO:0005886
description wd and tetratricopeptide repeats protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43546: 244542-245280 , PASA_asmbl_43547: 246189-260165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_220 0.0 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
2 Hb_020378_030 0.0370157894 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
3 Hb_001814_030 0.0447491036 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
4 Hb_000537_050 0.0464386167 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
5 Hb_000170_090 0.0511451225 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
6 Hb_000138_100 0.0596242668 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
7 Hb_000441_220 0.0604709817 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002205_250 0.0612450173 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
9 Hb_000592_030 0.0613334632 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
10 Hb_002890_130 0.0614271932 - - tip120, putative [Ricinus communis]
11 Hb_002989_020 0.0615557565 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
12 Hb_000590_050 0.0631047727 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
13 Hb_003734_010 0.0633960204 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
14 Hb_000317_100 0.0638983176 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
15 Hb_013399_020 0.0651126697 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
16 Hb_001655_030 0.0668451247 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
17 Hb_000890_060 0.066973976 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
18 Hb_003517_040 0.0672474978 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
19 Hb_002411_110 0.0672786906 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
20 Hb_011231_020 0.0680623932 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_220 Hb_004586_220 Hb_020378_030 Hb_020378_030 Hb_004586_220--Hb_020378_030 Hb_001814_030 Hb_001814_030 Hb_004586_220--Hb_001814_030 Hb_000537_050 Hb_000537_050 Hb_004586_220--Hb_000537_050 Hb_000170_090 Hb_000170_090 Hb_004586_220--Hb_000170_090 Hb_000138_100 Hb_000138_100 Hb_004586_220--Hb_000138_100 Hb_000441_220 Hb_000441_220 Hb_004586_220--Hb_000441_220 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_020378_030--Hb_000441_220 Hb_020378_030--Hb_001814_030 Hb_000592_030 Hb_000592_030 Hb_020378_030--Hb_000592_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_000537_050--Hb_000592_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_012506_030 Hb_012506_030 Hb_000441_220--Hb_012506_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_000441_220--Hb_013399_020 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84444 5.86553 5.00917 5.8609 4.91707 5.9421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44539 3.34658 4.57113 7.11855 5.919

CAGE analysis