Hb_004254_090

Information

Type -
Description -
Location Contig4254: 70951-75553
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05270g
description POPTRDRAFT_823289; hydroxyproline-rich glycoprotein
nr
ID XP_012093010.1
description PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
swissprot
ID Q9M9G6
description Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1
trembl
ID A0A067JKW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05893 PE=4 SV=1
Gene Ontology
ID GO:0000398
description cleavage stimulating factor 64

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42012: 70940-75470 , PASA_asmbl_42013: 71500-71868
cDNA
(Sanger)
(ID:Location)		 009_I14.ab1: 70940-74089 , 048_H19.ab1: 70940-74139

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004254_090 0.0 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
2 Hb_000138_100 0.0537871908 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
3 Hb_002592_060 0.0567516018 - - conserved hypothetical protein [Ricinus communis]
4 Hb_123915_040 0.0577400607 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
5 Hb_007479_040 0.0595345936 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004846_220 0.0617996997 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
7 Hb_002518_260 0.0618720234 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
8 Hb_000006_040 0.0618755474 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_002044_150 0.0624645408 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
10 Hb_002263_020 0.0627240372 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
11 Hb_156279_020 0.063354023 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
12 Hb_001021_150 0.0641039691 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
13 Hb_000731_270 0.0643578958 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
14 Hb_001357_250 0.065860029 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
15 Hb_006831_140 0.067868323 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_000028_480 0.069061516 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
17 Hb_000417_130 0.0698575206 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
18 Hb_001876_050 0.0705365091 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
19 Hb_000708_030 0.0710215787 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
20 Hb_033642_090 0.0717672518 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004254_090 Hb_004254_090 Hb_000138_100 Hb_000138_100 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_002518_260 Hb_002518_260 Hb_004254_090--Hb_002518_260 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_002592_060--Hb_001021_150 Hb_002592_060--Hb_004846_220 Hb_002592_060--Hb_002263_020 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_123915_040--Hb_001021_150 Hb_002110_190 Hb_002110_190 Hb_007479_040--Hb_002110_190 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_007479_040--Hb_002518_260 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_004846_220--Hb_001021_150 Hb_004846_220--Hb_006483_110 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_000792_010 Hb_000792_010 Hb_002518_260--Hb_000792_010 Hb_002518_260--Hb_000028_480 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.71946 5.62576 6.55096 5.67709 7.76454 6.58405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73666 7.1787 7.47742 9.45263 7.93794

CAGE analysis