Hb_004846_220

Information

Type -
Description -
Location Contig4846: 264417-272892
Sequence    

Annotation

kegg
ID tcc:TCM_027489
description Phosphatase 2C family protein
nr
ID XP_012067475.1
description PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
swissprot
ID Q9SZ53
description Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1
trembl
ID A0A061GGB7
description Phosphatase 2C family protein OS=Theobroma cacao GN=TCM_027489 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 60

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_220 0.0 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
2 Hb_000138_100 0.0441833375 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
3 Hb_041290_020 0.0479303298 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
4 Hb_002592_060 0.0546750887 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001021_150 0.0607180426 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
6 Hb_004254_090 0.0617996997 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
7 Hb_006483_110 0.0625223822 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
8 Hb_028960_020 0.0629139259 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
9 Hb_000329_800 0.0630919341 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000406_200 0.0642298437 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
11 Hb_007426_110 0.0664055867 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
12 Hb_005000_170 0.0667328355 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
13 Hb_002600_150 0.0671297025 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
14 Hb_002263_020 0.0672415994 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_000347_430 0.0673955765 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
16 Hb_001301_150 0.0693879312 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
17 Hb_009898_050 0.0695053741 - - PREDICTED: beta-taxilin [Jatropha curcas]
18 Hb_168978_030 0.0705745185 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
19 Hb_013726_090 0.0711855472 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
20 Hb_001442_040 0.0712835355 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004846_220 Hb_004846_220 Hb_000138_100 Hb_000138_100 Hb_004846_220--Hb_000138_100 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_002592_060 Hb_002592_060 Hb_004846_220--Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_004846_220--Hb_001021_150 Hb_004254_090 Hb_004254_090 Hb_004846_220--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_004846_220--Hb_006483_110 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_041290_020--Hb_006483_110 Hb_004109_080 Hb_004109_080 Hb_041290_020--Hb_004109_080 Hb_028960_020 Hb_028960_020 Hb_041290_020--Hb_028960_020 Hb_041290_020--Hb_000138_100 Hb_041290_020--Hb_000406_200 Hb_002592_060--Hb_001021_150 Hb_002592_060--Hb_002263_020 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_002592_060--Hb_006483_110 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_002518_260 Hb_002518_260 Hb_004254_090--Hb_002518_260 Hb_007426_110 Hb_007426_110 Hb_006483_110--Hb_007426_110 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30247 2.89412 4.9148 4.30501 4.27614 4.73612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51754 4.1109 4.02552 6.08242 6.25177

CAGE analysis