Hb_001946_400

Information

Type -
Description -
Location Contig1946: 327725-333224
Sequence    

Annotation

kegg
ID rcu:RCOM_0221070
description mutt/nudix hydrolase, putative (EC:3.6.1.22)
nr
ID XP_012078745.1
description PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
swissprot
ID Q94A82
description Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1
trembl
ID A0A067KKN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13299 PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19438: 327797-333071 , PASA_asmbl_19439: 328449-328700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_400 0.0 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
2 Hb_001021_150 0.0512682403 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
3 Hb_014834_150 0.0597070401 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_001599_040 0.0602449736 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
5 Hb_002553_060 0.0602665147 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
6 Hb_008847_030 0.0614923856 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
7 Hb_007416_340 0.0618927926 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_006831_140 0.065029726 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_004450_040 0.0662633817 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
10 Hb_000816_250 0.0665469778 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
11 Hb_007390_010 0.0667516978 - - catalytic, putative [Ricinus communis]
12 Hb_003125_120 0.0672303737 - - PREDICTED: TITAN-like protein [Jatropha curcas]
13 Hb_000708_030 0.0682626934 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
14 Hb_000081_160 0.0700378303 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
15 Hb_000640_170 0.0707211185 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
16 Hb_000035_470 0.0715132612 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_001902_030 0.072017024 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
18 Hb_003647_140 0.0725437993 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
19 Hb_189216_020 0.0728739856 - - PREDICTED: translin [Jatropha curcas]
20 Hb_156279_020 0.0731678971 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_400 Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_001946_400--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_002553_060 Hb_002553_060 Hb_001946_400--Hb_002553_060 Hb_008847_030 Hb_008847_030 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_001021_150--Hb_008847_030 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_003513_010 Hb_003513_010 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_002303_070 Hb_002303_070 Hb_001599_040--Hb_002303_070 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_002553_060--Hb_001021_150 Hb_001318_280 Hb_001318_280 Hb_002553_060--Hb_001318_280 Hb_008616_050 Hb_008616_050 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_189216_020 Hb_189216_020 Hb_002553_060--Hb_189216_020 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_003125_120 Hb_003125_120 Hb_007416_340--Hb_003125_120 Hb_007416_340--Hb_003938_090 Hb_000484_030 Hb_000484_030 Hb_007416_340--Hb_000484_030 Hb_008453_140 Hb_008453_140 Hb_007416_340--Hb_008453_140 Hb_001922_150 Hb_001922_150 Hb_007416_340--Hb_001922_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.525 7.82976 10.632 11.5273 9.79892 11.0892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8334 15.0433 7.87609 10.3275 12.888

CAGE analysis