Hb_003416_010

Information

Type -
Description -
Location Contig3416: 9420-22410
Sequence    

Annotation

kegg
ID mdm:103446296
description 26S proteasome non-ATPase regulatory subunit 13 homolog B
nr
ID XP_008383605.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
swissprot
ID Q8RWF0
description 26S proteasome non-ATPase regulatory subunit 13 homolog A OS=Arabidopsis thaliana GN=RPN9A PE=1 SV=1
trembl
ID B9RZ27
description 26S proteasome subunit, putative OS=Ricinus communis GN=RCOM_1316800 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 13 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35676: 9487-22348
cDNA
(Sanger)
(ID:Location)		 016_I20.ab1: 16719-22278

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003416_010 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
2 Hb_008847_030 0.0544923357 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
3 Hb_002641_060 0.0591140854 - - prefoldin subunit, putative [Ricinus communis]
4 Hb_005496_140 0.0608102188 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002863_050 0.0661450382 - - aldose 1-epimerase, putative [Ricinus communis]
6 Hb_003938_090 0.0663388719 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001142_030 0.0681638203 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
8 Hb_002013_020 0.0700190863 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
9 Hb_000340_180 0.0708447577 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
10 Hb_000905_110 0.0711784385 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
11 Hb_000227_080 0.0727166079 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000137_040 0.0740117705 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
13 Hb_001163_050 0.0771037162 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
14 Hb_120410_010 0.0791770108 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
15 Hb_008494_100 0.0793160405 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
16 Hb_001635_180 0.0802599372 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
17 Hb_000580_180 0.0810552304 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013575_010 0.081357855 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
19 Hb_027380_060 0.0813761613 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
20 Hb_007878_010 0.081585665 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003416_010 Hb_003416_010 Hb_008847_030 Hb_008847_030 Hb_003416_010--Hb_008847_030 Hb_002641_060 Hb_002641_060 Hb_003416_010--Hb_002641_060 Hb_005496_140 Hb_005496_140 Hb_003416_010--Hb_005496_140 Hb_002863_050 Hb_002863_050 Hb_003416_010--Hb_002863_050 Hb_003938_090 Hb_003938_090 Hb_003416_010--Hb_003938_090 Hb_001142_030 Hb_001142_030 Hb_003416_010--Hb_001142_030 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_008847_030--Hb_003938_090 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_008847_030--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_000580_180 Hb_000580_180 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_002863_050--Hb_001142_030 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_003938_090--Hb_002641_060 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_001142_030--Hb_000580_180 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4158 17.3923 30.0126 30.4908 31.7368 30.0439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4087 47.4417 27.7676 22.3848 25.6212

CAGE analysis