Hb_000621_010

Information

Type -
Description -
Location Contig621: 9678-16746
Sequence    

Annotation

kegg
ID pxb:103948498
description uncharacterized LOC103948498
nr
ID XP_008381265.1
description PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
swissprot
ID -
description -
trembl
ID B9SZ90
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1056060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51502: 11327-16770 , PASA_asmbl_51503: 14560-14951 , PASA_asmbl_51504: 11327-16770 , PASA_asmbl_51505: 15025-15214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000621_010 0.0 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
2 Hb_008847_030 0.0563298259 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
3 Hb_002811_180 0.0616372956 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000181_130 0.0702777264 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003938_090 0.0746791249 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005054_090 0.0761074484 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
7 Hb_005504_060 0.0767665757 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
8 Hb_003750_050 0.0801142398 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
9 Hb_000032_520 0.0815279996 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
10 Hb_007416_340 0.0819022544 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_004109_080 0.0820191841 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
12 Hb_003416_010 0.0822904199 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
13 Hb_054865_150 0.0825861066 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
14 Hb_000116_450 0.0831286121 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
15 Hb_000025_640 0.0832626371 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
16 Hb_002374_370 0.0842151428 - - protein with unknown function [Ricinus communis]
17 Hb_004567_090 0.0847517389 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
18 Hb_000594_050 0.0848539642 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
19 Hb_001021_150 0.086142535 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
20 Hb_000340_530 0.0871529583 - - hypothetical protein VITISV_016664 [Vitis vinifera]

Gene co-expression network

sample Hb_000621_010 Hb_000621_010 Hb_008847_030 Hb_008847_030 Hb_000621_010--Hb_008847_030 Hb_002811_180 Hb_002811_180 Hb_000621_010--Hb_002811_180 Hb_000181_130 Hb_000181_130 Hb_000621_010--Hb_000181_130 Hb_003938_090 Hb_003938_090 Hb_000621_010--Hb_003938_090 Hb_005054_090 Hb_005054_090 Hb_000621_010--Hb_005054_090 Hb_005504_060 Hb_005504_060 Hb_000621_010--Hb_005504_060 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_003750_050 Hb_003750_050 Hb_002811_180--Hb_003750_050 Hb_000260_330 Hb_000260_330 Hb_002811_180--Hb_000260_330 Hb_002811_180--Hb_008847_030 Hb_000392_430 Hb_000392_430 Hb_002811_180--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_002811_180--Hb_000111_320 Hb_009328_020 Hb_009328_020 Hb_000181_130--Hb_009328_020 Hb_000594_050 Hb_000594_050 Hb_000181_130--Hb_000594_050 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_065500_060 Hb_065500_060 Hb_000181_130--Hb_065500_060 Hb_000181_130--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_003938_090--Hb_002641_060 Hb_000792_010 Hb_000792_010 Hb_005054_090--Hb_000792_010 Hb_007645_100 Hb_007645_100 Hb_005054_090--Hb_007645_100 Hb_003029_110 Hb_003029_110 Hb_005054_090--Hb_003029_110 Hb_000029_300 Hb_000029_300 Hb_005054_090--Hb_000029_300 Hb_000032_520 Hb_000032_520 Hb_005054_090--Hb_000032_520 Hb_007672_060 Hb_007672_060 Hb_005504_060--Hb_007672_060 Hb_005504_060--Hb_054865_150 Hb_005504_060--Hb_005054_090 Hb_000170_070 Hb_000170_070 Hb_005504_060--Hb_000170_070 Hb_002027_290 Hb_002027_290 Hb_005504_060--Hb_002027_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10141 2.97845 2.91677 4.43859 4.62316 5.03403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.21511 5.54821 3.27433 3.56318 3.94994

CAGE analysis