Hb_000170_070

Information

Type transcription factor
Description TF Family: TRAF
Location Contig170: 91119-93627
Sequence    

Annotation

kegg
ID rcu:RCOM_0561500
description protein binding protein, putative
nr
ID XP_012078336.1
description PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
swissprot
ID Q6DBN1
description BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1
trembl
ID A0A067KCY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12165 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15861: 90982-93618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_070 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
2 Hb_000441_200 0.0812916306 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
3 Hb_012035_050 0.0828012401 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
4 Hb_000003_590 0.0860431187 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
5 Hb_000025_640 0.0861442163 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
6 Hb_005504_060 0.0882526816 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
7 Hb_008453_030 0.0883791645 - - Thioredoxin superfamily protein [Theobroma cacao]
8 Hb_005188_080 0.0911193464 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
9 Hb_001579_220 0.0913121996 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
10 Hb_000680_160 0.0918254431 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
11 Hb_003465_030 0.0922135655 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000645_090 0.0936356377 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002110_190 0.0944923487 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
14 Hb_012633_040 0.0953320378 - - -
15 Hb_001489_090 0.0958619128 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
16 Hb_009558_030 0.0977226703 - - myb3r3, putative [Ricinus communis]
17 Hb_001369_690 0.0984038223 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
18 Hb_002740_180 0.0988168232 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000092_170 0.0993938575 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
20 Hb_002078_350 0.0995702399 - - hypothetical protein B456_005G166600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000170_070 Hb_000170_070 Hb_000441_200 Hb_000441_200 Hb_000170_070--Hb_000441_200 Hb_012035_050 Hb_012035_050 Hb_000170_070--Hb_012035_050 Hb_000003_590 Hb_000003_590 Hb_000170_070--Hb_000003_590 Hb_000025_640 Hb_000025_640 Hb_000170_070--Hb_000025_640 Hb_005504_060 Hb_005504_060 Hb_000170_070--Hb_005504_060 Hb_008453_030 Hb_008453_030 Hb_000170_070--Hb_008453_030 Hb_026198_070 Hb_026198_070 Hb_000441_200--Hb_026198_070 Hb_000081_160 Hb_000081_160 Hb_000441_200--Hb_000081_160 Hb_000111_320 Hb_000111_320 Hb_000441_200--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_000441_200--Hb_000466_140 Hb_000254_090 Hb_000254_090 Hb_000441_200--Hb_000254_090 Hb_001318_280 Hb_001318_280 Hb_000441_200--Hb_001318_280 Hb_001579_220 Hb_001579_220 Hb_012035_050--Hb_001579_220 Hb_009558_030 Hb_009558_030 Hb_012035_050--Hb_009558_030 Hb_000111_420 Hb_000111_420 Hb_012035_050--Hb_000111_420 Hb_000329_470 Hb_000329_470 Hb_012035_050--Hb_000329_470 Hb_155159_030 Hb_155159_030 Hb_012035_050--Hb_155159_030 Hb_000032_520 Hb_000032_520 Hb_000003_590--Hb_000032_520 Hb_002110_190 Hb_002110_190 Hb_000003_590--Hb_002110_190 Hb_001377_490 Hb_001377_490 Hb_000003_590--Hb_001377_490 Hb_004567_090 Hb_004567_090 Hb_000003_590--Hb_004567_090 Hb_001377_510 Hb_001377_510 Hb_000003_590--Hb_001377_510 Hb_000487_270 Hb_000487_270 Hb_000003_590--Hb_000487_270 Hb_156279_020 Hb_156279_020 Hb_000025_640--Hb_156279_020 Hb_000107_330 Hb_000107_330 Hb_000025_640--Hb_000107_330 Hb_001902_030 Hb_001902_030 Hb_000025_640--Hb_001902_030 Hb_008847_030 Hb_008847_030 Hb_000025_640--Hb_008847_030 Hb_008554_130 Hb_008554_130 Hb_000025_640--Hb_008554_130 Hb_000025_640--Hb_000032_520 Hb_000621_010 Hb_000621_010 Hb_005504_060--Hb_000621_010 Hb_007672_060 Hb_007672_060 Hb_005504_060--Hb_007672_060 Hb_054865_150 Hb_054865_150 Hb_005504_060--Hb_054865_150 Hb_005054_090 Hb_005054_090 Hb_005504_060--Hb_005054_090 Hb_002027_290 Hb_002027_290 Hb_005504_060--Hb_002027_290 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_000421_220 Hb_000421_220 Hb_008453_030--Hb_000421_220 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_008453_030--Hb_000081_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5848 14.8114 9.47027 22.0163 25.7903 19.6229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.5485 28.7145 24.0597 20.9561 22.2352

CAGE analysis