Hb_000025_640

Information

Type -
Description -
Location Contig25: 579159-596776
Sequence    

Annotation

kegg
ID rcu:RCOM_0832280
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative
nr
ID XP_012087541.1
description PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
swissprot
ID Q9LNK7
description Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 SV=1
trembl
ID A0A067JLN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24279 PE=4 SV=1
Gene Ontology
ID GO:0016021
description magnesium transporter nipa2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26153: 579844-580144 , PASA_asmbl_26154: 583168-584811 , PASA_asmbl_26156: 585877-586527 , PASA_asmbl_26157: 586547-596512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_640 0.0 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
2 Hb_156279_020 0.0674236652 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
3 Hb_000107_330 0.0694240111 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
4 Hb_001902_030 0.0726128533 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
5 Hb_008847_030 0.0729999101 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
6 Hb_008554_130 0.0743893784 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
7 Hb_000032_520 0.0755711003 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
8 Hb_005725_250 0.076837116 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
9 Hb_002518_280 0.079169732 - - phosphate transporter [Manihot esculenta]
10 Hb_000342_130 0.0810376122 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
11 Hb_002154_100 0.0810654863 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
12 Hb_009767_110 0.0819754554 - - -
13 Hb_000041_110 0.0824392959 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
14 Hb_002518_260 0.0828741766 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
15 Hb_000331_260 0.0828827421 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
16 Hb_000621_010 0.0832626371 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
17 Hb_000441_200 0.083439586 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_000684_470 0.0836067045 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
19 Hb_000029_300 0.0839195304 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
20 Hb_044728_010 0.0843050738 - - -

Gene co-expression network

sample Hb_000025_640 Hb_000025_640 Hb_156279_020 Hb_156279_020 Hb_000025_640--Hb_156279_020 Hb_000107_330 Hb_000107_330 Hb_000025_640--Hb_000107_330 Hb_001902_030 Hb_001902_030 Hb_000025_640--Hb_001902_030 Hb_008847_030 Hb_008847_030 Hb_000025_640--Hb_008847_030 Hb_008554_130 Hb_008554_130 Hb_000025_640--Hb_008554_130 Hb_000032_520 Hb_000032_520 Hb_000025_640--Hb_000032_520 Hb_000331_260 Hb_000331_260 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_002078_350 Hb_002078_350 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_044728_010 Hb_044728_010 Hb_000107_330--Hb_044728_010 Hb_000092_170 Hb_000092_170 Hb_000107_330--Hb_000092_170 Hb_009767_110 Hb_009767_110 Hb_000107_330--Hb_009767_110 Hb_000085_050 Hb_000085_050 Hb_000107_330--Hb_000085_050 Hb_003525_010 Hb_003525_010 Hb_000107_330--Hb_003525_010 Hb_002263_020 Hb_002263_020 Hb_001902_030--Hb_002263_020 Hb_005291_050 Hb_005291_050 Hb_001902_030--Hb_005291_050 Hb_007657_010 Hb_007657_010 Hb_001902_030--Hb_007657_010 Hb_001902_030--Hb_000331_260 Hb_001902_030--Hb_008847_030 Hb_004109_080 Hb_004109_080 Hb_001902_030--Hb_004109_080 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_004800_080 Hb_004800_080 Hb_008554_130--Hb_004800_080 Hb_008554_130--Hb_009767_110 Hb_005496_130 Hb_005496_130 Hb_008554_130--Hb_005496_130 Hb_008554_130--Hb_044728_010 Hb_001369_730 Hb_001369_730 Hb_008554_130--Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_008554_130--Hb_167498_010 Hb_015934_040 Hb_015934_040 Hb_000032_520--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000032_520--Hb_001538_130 Hb_000003_590 Hb_000003_590 Hb_000032_520--Hb_000003_590 Hb_000792_010 Hb_000792_010 Hb_000032_520--Hb_000792_010 Hb_019863_070 Hb_019863_070 Hb_000032_520--Hb_019863_070 Hb_010618_010 Hb_010618_010 Hb_000032_520--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09756 4.0846 3.58637 4.47699 6.99507 4.67936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80638 7.10567 5.56812 4.52927 5.44735

CAGE analysis