Hb_005269_070

Information

Type -
Description -
Location Contig5269: 27687-51001
Sequence    

Annotation

kegg
ID rcu:RCOM_0554410
description GTP-binding protein typa/bipa, putative
nr
ID XP_012079025.1
description PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
swissprot
ID O25225
description GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=typA PE=3 SV=1
trembl
ID A0A067K9X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12224 PE=4 SV=1
Gene Ontology
ID GO:0003746
description translation factor guf1 organellar chromatophore

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47020: 28069-31250 , PASA_asmbl_47021: 45788-46026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005269_070 0.0 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
2 Hb_156279_020 0.0455980353 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
3 Hb_000331_260 0.0483224709 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
4 Hb_002169_040 0.0575496835 - - unknown [Populus trichocarpa]
5 Hb_000329_320 0.0608450184 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
6 Hb_000985_030 0.0632220165 - - PREDICTED: RRP15-like protein [Populus euphratica]
7 Hb_006634_070 0.0658677956 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
8 Hb_000215_110 0.0667897603 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
9 Hb_002835_040 0.0683815959 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
10 Hb_023344_120 0.068487709 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
11 Hb_000417_130 0.0695016767 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
12 Hb_000883_020 0.0708566494 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
13 Hb_000777_040 0.0718302725 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_001971_010 0.0719983371 - - F23N19.4 [Arabidopsis thaliana]
15 Hb_004619_030 0.0720435258 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
16 Hb_001357_350 0.0730969013 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000035_180 0.0747885761 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
18 Hb_007479_040 0.0748921835 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011995_010 0.0751865078 - - dc50, putative [Ricinus communis]
20 Hb_000207_050 0.0753102666 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005269_070 Hb_005269_070 Hb_156279_020 Hb_156279_020 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_002169_040 Hb_002169_040 Hb_005269_070--Hb_002169_040 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_005269_070--Hb_000985_030 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_156279_020--Hb_000331_260 Hb_002078_350 Hb_002078_350 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_002169_040--Hb_000985_030 Hb_007676_080 Hb_007676_080 Hb_002169_040--Hb_007676_080 Hb_002169_040--Hb_156279_020 Hb_001489_080 Hb_001489_080 Hb_002169_040--Hb_001489_080 Hb_000003_230 Hb_000003_230 Hb_002169_040--Hb_000003_230 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000917_060 Hb_000917_060 Hb_000329_320--Hb_000917_060 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260 Hb_000985_030--Hb_001489_080 Hb_000783_020 Hb_000783_020 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_006455_120 Hb_006455_120 Hb_006634_070--Hb_006455_120 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_000156_010 Hb_000156_010 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.548 5.46773 8.19113 7.63427 8.9673 10.4858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14049 11.1035 12.1942 10.081 9.03896

CAGE analysis