Hb_000985_030

Information

Type -
Description -
Location Contig985: 33413-36652
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16860g
description POPTRDRAFT_824372; hypothetical protein
nr
ID XP_011009088.1
description PREDICTED: RRP15-like protein [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9IAV9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16860g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64613: 33474-36571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000985_030 0.0 - - PREDICTED: RRP15-like protein [Populus euphratica]
2 Hb_001489_080 0.0501455741 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_002169_040 0.0525375437 - - unknown [Populus trichocarpa]
4 Hb_000783_020 0.0544385365 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
5 Hb_000777_040 0.0630061586 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
6 Hb_005269_070 0.0632220165 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
7 Hb_004934_100 0.0646785133 - - conserved hypothetical protein [Ricinus communis]
8 Hb_156279_020 0.0648591345 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_000260_030 0.067274498 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
10 Hb_002600_090 0.0677573248 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003053_020 0.0704188668 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
12 Hb_001971_010 0.0724002505 - - F23N19.4 [Arabidopsis thaliana]
13 Hb_000046_320 0.0735074791 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_000331_260 0.0742269705 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
15 Hb_003697_040 0.0752424201 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
16 Hb_000599_250 0.0753907952 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
17 Hb_000815_070 0.0754126894 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
18 Hb_032264_070 0.0760798485 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
19 Hb_003605_090 0.0762077052 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
20 Hb_015934_070 0.0762220828 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000985_030 Hb_000985_030 Hb_001489_080 Hb_001489_080 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000783_020 Hb_000783_020 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_001489_080--Hb_004934_100 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_001489_080--Hb_002169_040 Hb_002169_040--Hb_005269_070 Hb_007676_080 Hb_007676_080 Hb_002169_040--Hb_007676_080 Hb_156279_020 Hb_156279_020 Hb_002169_040--Hb_156279_020 Hb_002169_040--Hb_000003_230 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_003697_040 Hb_003697_040 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060 Hb_001009_270 Hb_001009_270 Hb_000777_040--Hb_001009_270 Hb_001633_050 Hb_001633_050 Hb_000777_040--Hb_001633_050 Hb_005779_060 Hb_005779_060 Hb_000777_040--Hb_005779_060 Hb_000206_210 Hb_000206_210 Hb_000777_040--Hb_000206_210 Hb_058999_020 Hb_058999_020 Hb_000777_040--Hb_058999_020 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_004934_100--Hb_000599_250 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_004934_100--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.508 10.2824 17.5192 17.8737 18.6953 20.7795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9852 32.9596 33.6558 21.3324 23.8389

CAGE analysis