Hb_003688_150

Information

Type -
Description -
Location Contig3688: 103887-107758
Sequence    

Annotation

kegg
ID rcu:RCOM_1469720
description glycine-rich RNA-binding protein, putative
nr
ID XP_002514655.1
description glycine-rich RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9FNR1
description Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1
trembl
ID B9RLN6
description Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1469720 PE=4 SV=1
Gene Ontology
ID GO:0005622
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37978: 103896-107677 , PASA_asmbl_37979: 105007-105225
cDNA
(Sanger)
(ID:Location)		 052_K14.ab1: 104457-107677

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_150 0.0 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
2 Hb_000783_020 0.0653199104 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
3 Hb_000120_460 0.0822945248 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
4 Hb_001619_070 0.0842975262 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
5 Hb_001318_270 0.084298772 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
6 Hb_103118_010 0.0849480045 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
7 Hb_086639_040 0.0865644561 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
8 Hb_003291_010 0.0878946189 - - ATP-dependent protease La, putative [Ricinus communis]
9 Hb_155159_030 0.0903788926 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
10 Hb_000250_060 0.091414351 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
11 Hb_070256_010 0.0915409408 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
12 Hb_011534_030 0.0922980371 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
13 Hb_003053_020 0.0928145439 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
14 Hb_005183_120 0.0935104814 - - protein translocase, putative [Ricinus communis]
15 Hb_001726_020 0.0939820388 - - PREDICTED: endophilin-A1 [Jatropha curcas]
16 Hb_079312_010 0.0941646947 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009113_070 0.0942086317 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
18 Hb_003020_220 0.0946072206 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
19 Hb_127552_030 0.0948871932 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_172932_010 0.0953345146 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003688_150 Hb_003688_150 Hb_000783_020 Hb_000783_020 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_001318_270 Hb_001318_270 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040 Hb_000985_030 Hb_000985_030 Hb_000783_020--Hb_000985_030 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_001489_080 Hb_001489_080 Hb_000783_020--Hb_001489_080 Hb_003697_040 Hb_003697_040 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060 Hb_000976_170 Hb_000976_170 Hb_000120_460--Hb_000976_170 Hb_025240_040 Hb_025240_040 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170 Hb_001009_170 Hb_001009_170 Hb_001619_070--Hb_001009_170 Hb_127552_030 Hb_127552_030 Hb_001619_070--Hb_127552_030 Hb_004607_050 Hb_004607_050 Hb_001619_070--Hb_004607_050 Hb_001959_210 Hb_001959_210 Hb_001619_070--Hb_001959_210 Hb_001619_070--Hb_000976_170 Hb_012325_020 Hb_012325_020 Hb_001318_270--Hb_012325_020 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001726_020 Hb_001726_020 Hb_001318_270--Hb_001726_020 Hb_000041_100 Hb_000041_100 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_001318_270--Hb_000783_020 Hb_000061_210 Hb_000061_210 Hb_103118_010--Hb_000061_210 Hb_012675_050 Hb_012675_050 Hb_103118_010--Hb_012675_050 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_002408_020 Hb_002408_020 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050 Hb_000574_390 Hb_000574_390 Hb_086639_040--Hb_000574_390 Hb_000707_050 Hb_000707_050 Hb_086639_040--Hb_000707_050 Hb_000631_080 Hb_000631_080 Hb_086639_040--Hb_000631_080 Hb_005496_130 Hb_005496_130 Hb_086639_040--Hb_005496_130 Hb_086639_040--Hb_103118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.8975 73.8723 52.6823 61.777 95.2762 105.699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.939 160.113 184.681 134.981 139.768

CAGE analysis