Hb_025240_040

Information

Type -
Description -
Location Contig25240: 89577-91263
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04120g
description POPTRDRAFT_733020; hypothetical protein
nr
ID KDP47002.1
description hypothetical protein JCGZ_02438 [Jatropha curcas]
swissprot
ID Q9LMT1
description Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2
trembl
ID A0A067LF30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02438 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable protein phosphatase 2c 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025240_040 0.0 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
2 Hb_004218_110 0.0542122899 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
3 Hb_004254_120 0.0591494103 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015934_070 0.0603851307 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
5 Hb_127552_030 0.0651697893 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_002759_060 0.065256123 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_000421_220 0.0661485533 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
8 Hb_000120_460 0.0682748801 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
9 Hb_000976_170 0.0685636649 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
10 Hb_001789_070 0.0699673697 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
11 Hb_001369_690 0.0700547897 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
12 Hb_003125_010 0.070528999 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
13 Hb_155159_030 0.0738568321 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
14 Hb_012799_160 0.073938111 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
15 Hb_001234_100 0.0769680949 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
16 Hb_000092_170 0.0771142182 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_003697_040 0.0777982057 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
18 Hb_024714_010 0.0780836951 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
19 Hb_002183_090 0.0806086463 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
20 Hb_033834_040 0.0813666225 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_025240_040 Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_004218_110--Hb_002759_060 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_031862_100 Hb_031862_100 Hb_015934_070--Hb_031862_100 Hb_015934_070--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_015934_070--Hb_001369_690 Hb_155159_030 Hb_155159_030 Hb_127552_030--Hb_155159_030 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_105123_010 Hb_105123_010 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_008453_030 Hb_008453_030 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_000421_220--Hb_015934_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92468 1.75074 2.13413 3.6516 3.7392 6.46293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.85525 7.36309 6.46049 4.33481 4.02219

CAGE analysis