Hb_001833_110

Information

Type -
Description -
Location Contig1833: 185434-189732
Sequence    

Annotation

kegg
ID rcu:RCOM_1692100
description hypothetical protein
nr
ID XP_002509968.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17922: 187327-189652 , PASA_asmbl_17923: 185595-189652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001833_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002759_060 0.0614455109 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
3 Hb_001360_050 0.0630067793 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
4 Hb_015807_040 0.069772802 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
5 Hb_001832_010 0.0704706913 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
6 Hb_004724_340 0.0730666277 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
7 Hb_000041_050 0.0762114853 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
8 Hb_012053_070 0.0771413427 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
9 Hb_024185_020 0.0787000678 - - -
10 Hb_010042_010 0.0787618703 - - Urease accessory protein ureD, putative [Ricinus communis]
11 Hb_001369_690 0.0805937077 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
12 Hb_005398_030 0.080968357 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
13 Hb_000025_120 0.0819427792 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
14 Hb_004218_110 0.0822959687 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
15 Hb_000496_060 0.0840825778 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
16 Hb_000270_370 0.0841740368 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
17 Hb_000125_190 0.0842088119 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
18 Hb_002016_100 0.08468555 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
19 Hb_005092_060 0.0849311902 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
20 Hb_000053_100 0.0850571317 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]

Gene co-expression network

sample Hb_001833_110 Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_001360_050--Hb_004724_340 Hb_002471_080 Hb_002471_080 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_001360_050--Hb_002759_060 Hb_012675_060 Hb_012675_060 Hb_001360_050--Hb_012675_060 Hb_000331_450 Hb_000331_450 Hb_015807_040--Hb_000331_450 Hb_010042_010 Hb_010042_010 Hb_015807_040--Hb_010042_010 Hb_006816_210 Hb_006816_210 Hb_015807_040--Hb_006816_210 Hb_159809_020 Hb_159809_020 Hb_015807_040--Hb_159809_020 Hb_015807_040--Hb_001832_010 Hb_000668_040 Hb_000668_040 Hb_001832_010--Hb_000668_040 Hb_001832_010--Hb_004724_340 Hb_001832_010--Hb_001360_050 Hb_004837_140 Hb_004837_140 Hb_001832_010--Hb_004837_140 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_004724_340--Hb_012675_060 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_004724_340--Hb_002471_080 Hb_000656_110 Hb_000656_110 Hb_000041_050--Hb_000656_110 Hb_000700_110 Hb_000700_110 Hb_000041_050--Hb_000700_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.93862 3.62389 4.52936 8.93023 9.21098 14.483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0489 17.4454 18.4262 10.6866 6.0983

CAGE analysis