Hb_000041_050

Information

Type -
Description -
Location Contig41: 58596-72205
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34910g
description POPTRDRAFT_1068795; hypothetical protein
nr
ID XP_012081446.1
description PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
swissprot
ID Q551H4
description Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1
trembl
ID A0A067LDN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09582 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40470: 58640-72543 , PASA_asmbl_40471: 70786-71173 , PASA_asmbl_40472: 68782-70017 , PASA_asmbl_40473: 71736-71978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_050 0.0 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
2 Hb_000656_110 0.0626741533 - - nucleolysin tia-1, putative [Ricinus communis]
3 Hb_000700_110 0.0628096863 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_007441_120 0.0698746352 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
5 Hb_001833_110 0.0762114853 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002759_060 0.0766863858 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_002477_330 0.0769370219 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
8 Hb_004218_110 0.0771331385 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
9 Hb_004724_420 0.0788610224 - - fucose synthetase, putative [Ricinus communis]
10 Hb_183086_060 0.0801652803 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
11 Hb_001248_130 0.0806199288 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
12 Hb_004109_190 0.0818390565 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
13 Hb_001898_220 0.0827793557 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
14 Hb_000976_410 0.0837211049 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
15 Hb_002016_110 0.084883831 - - transducin family protein [Populus trichocarpa]
16 Hb_000409_020 0.085087344 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
17 Hb_000445_420 0.085829613 - - protein transporter, putative [Ricinus communis]
18 Hb_093084_050 0.0863576692 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
19 Hb_002005_020 0.0889916643 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001635_060 0.0890876119 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000041_050 Hb_000041_050 Hb_000656_110 Hb_000656_110 Hb_000041_050--Hb_000656_110 Hb_000700_110 Hb_000700_110 Hb_000041_050--Hb_000700_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_001833_110 Hb_001833_110 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330 Hb_093084_050 Hb_093084_050 Hb_000656_110--Hb_093084_050 Hb_001102_140 Hb_001102_140 Hb_000656_110--Hb_001102_140 Hb_000656_110--Hb_000700_110 Hb_003125_010 Hb_003125_010 Hb_000656_110--Hb_003125_010 Hb_001369_690 Hb_001369_690 Hb_000656_110--Hb_001369_690 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_000700_110--Hb_002477_330 Hb_005663_060 Hb_005663_060 Hb_007441_120--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_004055_030 Hb_004055_030 Hb_007441_120--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_007441_120--Hb_006922_100 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_010504_020 Hb_010504_020 Hb_002477_330--Hb_010504_020 Hb_002477_330--Hb_148644_010 Hb_000103_090 Hb_000103_090 Hb_002477_330--Hb_000103_090 Hb_004128_190 Hb_004128_190 Hb_002477_330--Hb_004128_190 Hb_000045_090 Hb_000045_090 Hb_002477_330--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_002477_330--Hb_143398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.5401 17.191 10.7141 26.5544 27.3182 55.951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.1377 41.5018 60.7691 29.9111 19.3327

CAGE analysis