Hb_006198_080

Information

Type -
Description -
Location Contig6198: 50414-52920
Sequence    

Annotation

kegg
ID sot:102602618
description putative vesicle-associated membrane protein 726-like
nr
ID EYU17981.1
description hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
swissprot
ID Q9MAS5
description Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2
trembl
ID A0A022PQJ3
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013452mg PE=4 SV=1
Gene Ontology
ID GO:0005768
description vesicle-associated membrane synaptobrevin 7b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51373: 50529-55278
cDNA
(Sanger)
(ID:Location)		 027_C19.ab1: 51949-55278 , 045_G07.ab1: 50668-55160

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_080 0.0 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
2 Hb_003092_030 0.0492784168 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
3 Hb_000700_110 0.0715768001 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_000347_200 0.0816266 - - lsm1, putative [Ricinus communis]
5 Hb_037887_010 0.0827338622 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_000107_310 0.0858113143 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
7 Hb_021238_050 0.0862149105 - - conserved hypothetical protein [Ricinus communis]
8 Hb_148644_010 0.0870034529 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
9 Hb_000898_050 0.0890056518 - - -
10 Hb_012653_040 0.0920982042 - - UV-induced protein uvi31, putative [Ricinus communis]
11 Hb_001344_010 0.0921587067 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
12 Hb_001205_150 0.0924451555 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
13 Hb_000976_410 0.0937398186 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
14 Hb_000692_220 0.0993054603 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
15 Hb_000083_170 0.100474734 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
16 Hb_002477_330 0.1022163565 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
17 Hb_022833_100 0.1029212839 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
18 Hb_006429_010 0.1052424296 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
19 Hb_002445_120 0.1074498861 - - secretory carrier membrane protein, putative [Ricinus communis]
20 Hb_000041_050 0.1084776964 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_006198_080 Hb_006198_080 Hb_003092_030 Hb_003092_030 Hb_006198_080--Hb_003092_030 Hb_000700_110 Hb_000700_110 Hb_006198_080--Hb_000700_110 Hb_000347_200 Hb_000347_200 Hb_006198_080--Hb_000347_200 Hb_037887_010 Hb_037887_010 Hb_006198_080--Hb_037887_010 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_021238_050 Hb_021238_050 Hb_006198_080--Hb_021238_050 Hb_003092_030--Hb_000700_110 Hb_003092_030--Hb_021238_050 Hb_003092_030--Hb_037887_010 Hb_000898_050 Hb_000898_050 Hb_003092_030--Hb_000898_050 Hb_006429_010 Hb_006429_010 Hb_003092_030--Hb_006429_010 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000700_110--Hb_000347_200 Hb_002477_330 Hb_002477_330 Hb_000700_110--Hb_002477_330 Hb_000173_340 Hb_000173_340 Hb_000347_200--Hb_000173_340 Hb_000347_200--Hb_003092_030 Hb_012305_050 Hb_012305_050 Hb_000347_200--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_000347_200--Hb_000024_080 Hb_000083_170 Hb_000083_170 Hb_037887_010--Hb_000083_170 Hb_037887_010--Hb_000898_050 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_003125_010 Hb_003125_010 Hb_000107_310--Hb_003125_010 Hb_000107_310--Hb_003092_030 Hb_000656_110 Hb_000656_110 Hb_000107_310--Hb_000656_110 Hb_002759_060 Hb_002759_060 Hb_000107_310--Hb_002759_060 Hb_180301_010 Hb_180301_010 Hb_000107_310--Hb_180301_010 Hb_021238_050--Hb_037887_010 Hb_000056_260 Hb_000056_260 Hb_021238_050--Hb_000056_260 Hb_000326_090 Hb_000326_090 Hb_021238_050--Hb_000326_090 Hb_002296_040 Hb_002296_040 Hb_021238_050--Hb_002296_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.8676 28.8766 18.6316 84.978 47.0053 128.716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.7629 71.4443 99.8707 38.9478 38.2583

CAGE analysis