Hb_000898_050

Information

Type -
Description -
Location Contig898: 105795-106474
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M1DR72
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400042643 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000898_050 0.0 - - -
2 Hb_003092_030 0.0741780722 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
3 Hb_037887_010 0.076672895 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
4 Hb_001114_130 0.0876131656 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
5 Hb_000856_260 0.0889913383 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
6 Hb_006198_080 0.0890056518 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
7 Hb_006429_010 0.0898051137 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
8 Hb_002005_020 0.0932493614 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000107_310 0.0935090213 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
10 Hb_001205_150 0.0937840443 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
11 Hb_180301_010 0.0940240103 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
12 Hb_012653_040 0.0942876329 - - UV-induced protein uvi31, putative [Ricinus communis]
13 Hb_064441_010 0.0960166119 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
14 Hb_000479_190 0.0976967006 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000635_150 0.0980205802 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
16 Hb_001584_190 0.0987040737 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
17 Hb_011457_090 0.1004990149 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
18 Hb_002759_060 0.1031822208 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
19 Hb_000692_220 0.1040565518 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
20 Hb_001504_080 0.1044879984 - - golgi snare 11 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000898_050 Hb_000898_050 Hb_003092_030 Hb_003092_030 Hb_000898_050--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_000898_050--Hb_037887_010 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_000856_260 Hb_000856_260 Hb_000898_050--Hb_000856_260 Hb_006198_080 Hb_006198_080 Hb_000898_050--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_000898_050--Hb_006429_010 Hb_003092_030--Hb_006198_080 Hb_000700_110 Hb_000700_110 Hb_003092_030--Hb_000700_110 Hb_021238_050 Hb_021238_050 Hb_003092_030--Hb_021238_050 Hb_003092_030--Hb_037887_010 Hb_003092_030--Hb_006429_010 Hb_000083_170 Hb_000083_170 Hb_037887_010--Hb_000083_170 Hb_037887_010--Hb_006198_080 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_000692_220 Hb_000692_220 Hb_001114_130--Hb_000692_220 Hb_001205_150 Hb_001205_150 Hb_001114_130--Hb_001205_150 Hb_001235_030 Hb_001235_030 Hb_001114_130--Hb_001235_030 Hb_000107_310 Hb_000107_310 Hb_001114_130--Hb_000107_310 Hb_001461_010 Hb_001461_010 Hb_001114_130--Hb_001461_010 Hb_000224_120 Hb_000224_120 Hb_000856_260--Hb_000224_120 Hb_000856_260--Hb_006429_010 Hb_180301_010 Hb_180301_010 Hb_000856_260--Hb_180301_010 Hb_000635_150 Hb_000635_150 Hb_000856_260--Hb_000635_150 Hb_074979_020 Hb_074979_020 Hb_000856_260--Hb_074979_020 Hb_006198_080--Hb_000700_110 Hb_000347_200 Hb_000347_200 Hb_006198_080--Hb_000347_200 Hb_006198_080--Hb_000107_310 Hb_006198_080--Hb_021238_050 Hb_000479_190 Hb_000479_190 Hb_006429_010--Hb_000479_190 Hb_006429_010--Hb_001205_150 Hb_004218_110 Hb_004218_110 Hb_006429_010--Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_006429_010--Hb_002759_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3995 9.54757 9.3074 42.0193 20.2234 55.438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.41 43.8691 70.9168 26.3768 16.4242

CAGE analysis