Hb_000635_150

Information

Type -
Description -
Location Contig635: 86248-89730
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17190g
description POPTRDRAFT_712064; mitochondrial import receptor subunit TOM20-2 family protein
nr
ID XP_002303802.1
description mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
swissprot
ID P92792
description Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1
trembl
ID B9GZZ1
description Mitochondrial import receptor subunit TOM20-2 family protein OS=Populus trichocarpa GN=POPTR_0003s17190g PE=4 SV=1
Gene Ontology
ID GO:0043229
description mitochondrial import receptor subunit tom20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51917: 86418-89694
cDNA
(Sanger)
(ID:Location)		 013_F24.ab1: 86526-87394 , 044_P04.ab1: 86465-89282 , 050_M22.ab1: 86470-87194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_150 0.0 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
2 Hb_000985_060 0.0547233121 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
3 Hb_001519_050 0.0657112305 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
4 Hb_005092_060 0.0733833681 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
5 Hb_000125_190 0.0744936171 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
6 Hb_002759_060 0.0804248237 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_002005_020 0.081287369 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000363_360 0.0818577956 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
9 Hb_001461_010 0.0830565292 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
10 Hb_000479_190 0.0840088401 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027625_010 0.0858759082 - - PREDICTED: protein sym-1-like [Jatropha curcas]
12 Hb_002007_210 0.0863800928 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
13 Hb_009113_050 0.0870608167 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
14 Hb_004218_110 0.0883162674 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
15 Hb_000046_350 0.089235907 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000373_130 0.0892841733 - - PREDICTED: protein FAM188A [Jatropha curcas]
17 Hb_006429_010 0.0894315769 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
18 Hb_000072_180 0.0896240837 - - PREDICTED: EVI5-like protein [Jatropha curcas]
19 Hb_001833_110 0.089912622 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002061_040 0.0911516001 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000635_150 Hb_000635_150 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_001519_050 Hb_001519_050 Hb_000635_150--Hb_001519_050 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_000125_190 Hb_000125_190 Hb_000635_150--Hb_000125_190 Hb_002759_060 Hb_002759_060 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_000479_190 Hb_000479_190 Hb_000985_060--Hb_000479_190 Hb_114310_080 Hb_114310_080 Hb_000985_060--Hb_114310_080 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_000985_060--Hb_029388_030 Hb_000373_130 Hb_000373_130 Hb_001519_050--Hb_000373_130 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_002061_040 Hb_002061_040 Hb_001519_050--Hb_002061_040 Hb_001360_050 Hb_001360_050 Hb_005092_060--Hb_001360_050 Hb_001235_030 Hb_001235_030 Hb_005092_060--Hb_001235_030 Hb_005092_060--Hb_002759_060 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_005092_060--Hb_001833_110 Hb_020400_050 Hb_020400_050 Hb_000125_190--Hb_020400_050 Hb_000125_190--Hb_002061_040 Hb_000123_170 Hb_000123_170 Hb_000125_190--Hb_000123_170 Hb_000125_190--Hb_001833_110 Hb_002759_060--Hb_004218_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_002005_020--Hb_001519_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8271 8.65202 6.94899 23.2714 9.77844 23.4137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.401 36.1959 36.2842 19.1588 12.1245

CAGE analysis