Hb_005092_060

Information

Type -
Description -
Location Contig5092: 59746-64223
Sequence    

Annotation

kegg
ID rcu:RCOM_0861290
description snf1-kinase beta subunit, plants, putative
nr
ID XP_002522881.1
description snf1-kinase beta subunit, plants, putative [Ricinus communis]
swissprot
ID Q9SCY5
description SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
trembl
ID B9SA62
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0861290 PE=4 SV=1
Gene Ontology
ID GO:0005515
description snf1-related protein kinase regulatory subunit beta-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46222: 59777-64314
cDNA
(Sanger)
(ID:Location)		 006_H02.ab1: 64170-64308

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005092_060 0.0 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
2 Hb_001360_050 0.0694516771 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
3 Hb_001235_030 0.0714775579 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
4 Hb_002759_060 0.0716223595 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
5 Hb_000635_150 0.0733833681 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
6 Hb_004218_110 0.0750672254 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
7 Hb_001833_110 0.0849311902 - - conserved hypothetical protein [Ricinus communis]
8 Hb_027625_010 0.0910024324 - - PREDICTED: protein sym-1-like [Jatropha curcas]
9 Hb_000046_290 0.0917086525 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
10 Hb_020000_010 0.0922666316 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
11 Hb_009393_210 0.0929585051 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
12 Hb_000072_180 0.093470052 - - PREDICTED: EVI5-like protein [Jatropha curcas]
13 Hb_002471_080 0.0936949595 - - oxidoreductase, putative [Ricinus communis]
14 Hb_006641_010 0.0953217109 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
15 Hb_002016_120 0.0965181598 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
16 Hb_124755_010 0.0970552491 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
17 Hb_004678_050 0.0975230619 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
18 Hb_024714_010 0.0984839608 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
19 Hb_025240_040 0.0986622191 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
20 Hb_004724_340 0.0989964378 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]

Gene co-expression network

sample Hb_005092_060 Hb_005092_060 Hb_001360_050 Hb_001360_050 Hb_005092_060--Hb_001360_050 Hb_001235_030 Hb_001235_030 Hb_005092_060--Hb_001235_030 Hb_002759_060 Hb_002759_060 Hb_005092_060--Hb_002759_060 Hb_000635_150 Hb_000635_150 Hb_005092_060--Hb_000635_150 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_005092_060--Hb_001833_110 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001360_050--Hb_001833_110 Hb_002471_080 Hb_002471_080 Hb_001360_050--Hb_002471_080 Hb_001360_050--Hb_002759_060 Hb_012675_060 Hb_012675_060 Hb_001360_050--Hb_012675_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_002759_060--Hb_004218_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_001519_050 Hb_001519_050 Hb_000635_150--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_000635_150--Hb_000125_190 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_004218_110--Hb_002005_020 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1769 8.31194 6.76751 19.7492 13.5943 35.4098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.1995 44.3905 42.5712 27.5049 20.5823

CAGE analysis