Hb_015807_040

Information

Type -
Description -
Location Contig15807: 38967-45194
Sequence    

Annotation

kegg
ID tcc:TCM_031093
description Transducin/WD40 repeat-like superfamily protein isoform 1
nr
ID XP_012070730.1
description PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
swissprot
ID Q8VZY6
description Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE=2 SV=1
trembl
ID A0A067KVM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00805 PE=4 SV=1
Gene Ontology
ID GO:0005677
description polycomb group protein fertilization-independent endosperm

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13876: 37180-37985 , PASA_asmbl_13877: 39160-45148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_040 0.0 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
2 Hb_000331_450 0.0487662942 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
3 Hb_010042_010 0.0585210459 - - Urease accessory protein ureD, putative [Ricinus communis]
4 Hb_006816_210 0.068041454 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
5 Hb_001833_110 0.069772802 - - conserved hypothetical protein [Ricinus communis]
6 Hb_159809_020 0.0699444596 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001832_010 0.070624275 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
8 Hb_003599_040 0.072338964 - - unnamed protein product [Vitis vinifera]
9 Hb_012053_070 0.0724744562 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
10 Hb_001421_060 0.0730287488 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
11 Hb_002284_240 0.0737894103 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
12 Hb_001369_690 0.0757382674 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
13 Hb_001016_030 0.0775904235 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
14 Hb_003125_010 0.0791082047 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
15 Hb_002477_070 0.0795777244 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
16 Hb_000103_090 0.0804856598 - - PREDICTED: protein RDM1 [Jatropha curcas]
17 Hb_017413_010 0.0822878473 - - -
18 Hb_004724_340 0.0828966178 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
19 Hb_001789_070 0.0834262638 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
20 Hb_001360_050 0.0834447943 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_015807_040 Hb_015807_040 Hb_000331_450 Hb_000331_450 Hb_015807_040--Hb_000331_450 Hb_010042_010 Hb_010042_010 Hb_015807_040--Hb_010042_010 Hb_006816_210 Hb_006816_210 Hb_015807_040--Hb_006816_210 Hb_001833_110 Hb_001833_110 Hb_015807_040--Hb_001833_110 Hb_159809_020 Hb_159809_020 Hb_015807_040--Hb_159809_020 Hb_001832_010 Hb_001832_010 Hb_015807_040--Hb_001832_010 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_006816_210--Hb_017413_010 Hb_006816_210--Hb_000331_450 Hb_000086_550 Hb_000086_550 Hb_006816_210--Hb_000086_550 Hb_006846_060 Hb_006846_060 Hb_006816_210--Hb_006846_060 Hb_005357_130 Hb_005357_130 Hb_006816_210--Hb_005357_130 Hb_002759_060 Hb_002759_060 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_000668_040 Hb_000668_040 Hb_001832_010--Hb_000668_040 Hb_001832_010--Hb_004724_340 Hb_001832_010--Hb_001360_050 Hb_004837_140 Hb_004837_140 Hb_001832_010--Hb_004837_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9005 6.55928 10.3184 16.9305 19.9099 25.1675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.6602 36.3248 24.9523 15.4255 12.1724

CAGE analysis