Hb_000020_060

Information

Type -
Description -
Location Contig20: 116506-119647
Sequence    

Annotation

kegg
ID vvi:100264962
description trafficking protein particle complex subunit 4
nr
ID XP_012074944.1
description PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
swissprot
ID Q54UU1
description Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1
trembl
ID A5C3J4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00710 PE=4 SV=1
Gene Ontology
ID GO:0005737
description trafficking protein particle complex subunit 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20141: 116550-119610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_060 0.0 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
2 Hb_002995_020 0.0480796981 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
3 Hb_004116_190 0.0511482437 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
4 Hb_159809_020 0.0589847385 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_172426_040 0.0632179573 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
6 Hb_003787_010 0.0633684729 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
7 Hb_002110_120 0.0635632455 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
8 Hb_002284_240 0.0648461908 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
9 Hb_001504_110 0.0672361732 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
10 Hb_024071_020 0.0678435688 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
11 Hb_001633_050 0.0687488983 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
12 Hb_000059_370 0.0687687382 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
13 Hb_003599_040 0.0691294921 - - unnamed protein product [Vitis vinifera]
14 Hb_001140_370 0.0735904426 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
15 Hb_001616_040 0.0740510232 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
16 Hb_000580_090 0.0743148831 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
17 Hb_000920_110 0.0748245125 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
18 Hb_000656_240 0.0750471615 - - proteasome subunit alpha type, putative [Ricinus communis]
19 Hb_003918_010 0.0751136882 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
20 Hb_001221_210 0.075769965 - - thiF family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000020_060 Hb_000020_060 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_002995_020--Hb_004116_190 Hb_002995_020--Hb_003787_010 Hb_001633_050 Hb_001633_050 Hb_002995_020--Hb_001633_050 Hb_000656_240 Hb_000656_240 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_004116_190--Hb_001633_050 Hb_004116_190--Hb_000656_240 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_172426_040--Hb_004116_190 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_003787_010--Hb_005846_040 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_007317_150 Hb_007317_150 Hb_002110_120--Hb_007317_150 Hb_001269_630 Hb_001269_630 Hb_002110_120--Hb_001269_630 Hb_001235_190 Hb_001235_190 Hb_002110_120--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_002110_120--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_002110_120--Hb_008173_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8923 12.6162 17.8821 16.3242 22.5202 22.6975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.365 46.7523 27.6144 20.8876 9.88729

CAGE analysis