Hb_007317_150

Information

Type -
Description -
Location Contig7317: 103290-106425
Sequence    

Annotation

kegg
ID rcu:RCOM_1281730
description 40S ribosomal protein S25, putative
nr
ID XP_012090801.1
description PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
swissprot
ID Q9T029
description 40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1
trembl
ID A0A067JDX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56060: 103374-106348
cDNA
(Sanger)
(ID:Location)		 007_L20r.ab1: 106635-109580

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_150 0.0 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
2 Hb_002110_120 0.0459959224 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
3 Hb_001235_190 0.0729144336 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
4 Hb_001269_630 0.0765570218 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
5 Hb_000630_060 0.0770512979 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
6 Hb_000020_060 0.0781247928 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
7 Hb_000926_300 0.0814899666 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
8 Hb_000698_030 0.0845251892 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
9 Hb_000307_090 0.0867944124 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
10 Hb_003126_080 0.0869179975 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
11 Hb_000025_600 0.0882635804 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
12 Hb_000007_100 0.0895217272 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
13 Hb_001818_020 0.0911046913 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
14 Hb_008173_090 0.0912620301 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_003599_040 0.0915562225 - - unnamed protein product [Vitis vinifera]
16 Hb_002284_240 0.0918342994 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
17 Hb_003656_070 0.0933475208 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
18 Hb_000334_210 0.094083426 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
19 Hb_001832_060 0.0950625551 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
20 Hb_001722_100 0.0956168256 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007317_150 Hb_007317_150 Hb_002110_120 Hb_002110_120 Hb_007317_150--Hb_002110_120 Hb_001235_190 Hb_001235_190 Hb_007317_150--Hb_001235_190 Hb_001269_630 Hb_001269_630 Hb_007317_150--Hb_001269_630 Hb_000630_060 Hb_000630_060 Hb_007317_150--Hb_000630_060 Hb_000020_060 Hb_000020_060 Hb_007317_150--Hb_000020_060 Hb_000926_300 Hb_000926_300 Hb_007317_150--Hb_000926_300 Hb_002110_120--Hb_001269_630 Hb_002110_120--Hb_000020_060 Hb_002110_120--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_002110_120--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_002110_120--Hb_008173_090 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_001832_060 Hb_001832_060 Hb_001269_630--Hb_001832_060 Hb_001269_630--Hb_003656_070 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020 Hb_033594_110 Hb_033594_110 Hb_000630_060--Hb_033594_110 Hb_003927_140 Hb_003927_140 Hb_000630_060--Hb_003927_140 Hb_000630_060--Hb_000926_300 Hb_002518_050 Hb_002518_050 Hb_000630_060--Hb_002518_050 Hb_000630_060--Hb_002110_120 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000926_300--Hb_000307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.6229 34.6944 42.7402 33.9669 71.3351 50.5212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.798 148.236 55.9728 49.6406 16.6773

CAGE analysis