Hb_000007_100

Information

Type -
Description -
Location Contig7: 108950-111481
Sequence    

Annotation

kegg
ID rcu:RCOM_1464970
description hypothetical protein
nr
ID XP_012080499.1
description PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11810 PE=4 SV=1
Gene Ontology
ID GO:0005634
description at3g25550 mwl2_17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54732: 108912-111481
cDNA
(Sanger)
(ID:Location)		 047_H18.ab1: 108955-111229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_100 0.0 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
2 Hb_000926_300 0.0516132994 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
3 Hb_000926_250 0.0553902786 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
4 Hb_000380_190 0.0559448306 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
5 Hb_002284_240 0.0625997004 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
6 Hb_009793_010 0.0633966636 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
7 Hb_003599_040 0.0652658367 - - unnamed protein product [Vitis vinifera]
8 Hb_001477_110 0.0688717142 - - prohibitin, putative [Ricinus communis]
9 Hb_159809_020 0.0692321024 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_033834_040 0.0706526556 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002226_070 0.0710676731 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
12 Hb_001818_020 0.0712382918 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
13 Hb_000085_320 0.0713884779 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
14 Hb_002963_010 0.0736133124 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
15 Hb_003050_080 0.0741250852 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_000832_140 0.0744320355 - - actin depolymerizing factor 4 [Hevea brasiliensis]
17 Hb_001824_070 0.0749692017 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
18 Hb_002105_090 0.0755309627 - - Rab4 [Hevea brasiliensis]
19 Hb_002311_350 0.0760896211 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
20 Hb_128048_010 0.0765203308 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]

Gene co-expression network

sample Hb_000007_100 Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_000926_250--Hb_002284_240 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050 Hb_002311_350 Hb_002311_350 Hb_000380_190--Hb_002311_350 Hb_001477_110 Hb_001477_110 Hb_000380_190--Hb_001477_110 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070 Hb_002284_240--Hb_003599_040 Hb_159809_020 Hb_159809_020 Hb_002284_240--Hb_159809_020 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_000327_190 Hb_000327_190 Hb_002284_240--Hb_000327_190 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_003599_040--Hb_159809_020 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_003599_040--Hb_000327_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.2934 32.5714 32.849 48.2928 80.6214 94.4313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.439 163.254 71.546 53.2633 22.5206

CAGE analysis