Hb_009554_010

Information

Type -
Description -
Location Contig9554: 3989-4357
Sequence    

Annotation

kegg
ID rcu:RCOM_0489740
description Protein trm112, putative
nr
ID XP_012089822.1
description PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
swissprot
ID Q9C9R3
description Multifunctional methyltransferase subunit TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1
trembl
ID A0A067JTJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00456 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 014_G15.ab1: 3972-4548 , 029_B21.ab1: 3940-4486

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009554_010 0.0 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
2 Hb_001638_260 0.0647008232 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
3 Hb_009793_010 0.0737367303 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
4 Hb_003226_210 0.0787795646 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
5 Hb_002713_070 0.0797416792 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
6 Hb_006816_530 0.0807169089 - - 60S ribosomal protein L18, putative [Ricinus communis]
7 Hb_000086_550 0.0828389461 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_000526_040 0.0832285441 - - 60S ribosomal protein L6, putative [Ricinus communis]
9 Hb_002660_030 0.0849297774 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001505_020 0.0850759576 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
11 Hb_011161_050 0.0874812677 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
12 Hb_001269_270 0.0878348467 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_000196_050 0.0878384511 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
14 Hb_000283_110 0.0895108267 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
15 Hb_002716_090 0.0898473511 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
16 Hb_000505_140 0.0915322934 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
17 Hb_002701_050 0.0927008921 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
18 Hb_015175_030 0.0927349463 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
19 Hb_000007_100 0.0929052247 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
20 Hb_001433_050 0.0933263008 - - 60S ribosomal protein L18, putative [Ricinus communis]

Gene co-expression network

sample Hb_009554_010 Hb_009554_010 Hb_001638_260 Hb_001638_260 Hb_009554_010--Hb_001638_260 Hb_009793_010 Hb_009793_010 Hb_009554_010--Hb_009793_010 Hb_003226_210 Hb_003226_210 Hb_009554_010--Hb_003226_210 Hb_002713_070 Hb_002713_070 Hb_009554_010--Hb_002713_070 Hb_006816_530 Hb_006816_530 Hb_009554_010--Hb_006816_530 Hb_000086_550 Hb_000086_550 Hb_009554_010--Hb_000086_550 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_000545_150 Hb_000545_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_003226_210--Hb_000283_110 Hb_003226_210--Hb_006816_530 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_000136_170 Hb_000136_170 Hb_002713_070--Hb_000136_170 Hb_002713_070--Hb_002660_030 Hb_004375_100 Hb_004375_100 Hb_002713_070--Hb_004375_100 Hb_001505_020 Hb_001505_020 Hb_002713_070--Hb_001505_020 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_002713_070--Hb_002925_030 Hb_006816_530--Hb_001814_050 Hb_006816_530--Hb_001505_020 Hb_006816_530--Hb_001214_160 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.903 47.4452 42.0538 111.825 109.242 191.114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
228.282 405.376 122.793 99.0528 28.2214

CAGE analysis