Hb_000526_150

Information

Type -
Description -
Location Contig526: 106477-108942
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10790g
description POPTRDRAFT_826237; hypothetical protein
nr
ID XP_002325967.2
description hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IQE8
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s10790g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46995: 106507-133219 , PASA_asmbl_46996: 106522-131542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000526_150 0.0 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
2 Hb_001269_270 0.0679816057 - - 60S ribosomal protein L27B [Hevea brasiliensis]
3 Hb_001638_260 0.0685257461 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
4 Hb_009851_100 0.0693661723 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
5 Hb_000545_150 0.0703074908 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_000634_050 0.0744452492 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
7 Hb_001818_020 0.0752433678 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
8 Hb_001584_070 0.0753613926 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010883_150 0.0760243091 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
10 Hb_002571_020 0.0794606779 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
11 Hb_001045_080 0.0854665717 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
12 Hb_008847_020 0.085582935 - - 40S ribosomal protein S17C [Hevea brasiliensis]
13 Hb_000617_090 0.0866414468 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
14 Hb_002897_080 0.0867850609 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
15 Hb_000057_070 0.0868062694 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
16 Hb_003125_150 0.0876122983 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
17 Hb_002311_320 0.0891830907 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
18 Hb_000970_010 0.0898823186 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
19 Hb_004005_010 0.0900732257 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
20 Hb_000025_600 0.0909545063 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000526_150 Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_003125_150 Hb_003125_150 Hb_001269_270--Hb_003125_150 Hb_001269_270--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_001269_270--Hb_000617_090 Hb_001045_080 Hb_001045_080 Hb_001269_270--Hb_001045_080 Hb_001269_270--Hb_009851_100 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_001638_260--Hb_000545_150 Hb_001638_260--Hb_001818_020 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_000312_090 Hb_000312_090 Hb_009851_100--Hb_000312_090 Hb_009851_100--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_012573_070 Hb_012573_070 Hb_000545_150--Hb_012573_070 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_000417_110 Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000970_010 Hb_000970_010 Hb_001818_020--Hb_000970_010 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.4898 16.0125 24.353 37.4723 62.189 77.4832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.25 213.922 55.4051 34.6794 11.6543

CAGE analysis