Hb_001818_020

Information

Type -
Description -
Location Contig1818: 9060-10507
Sequence    

Annotation

kegg
ID pda:103711864
description 60S ribosomal protein L21-1
nr
ID XP_008796392.1
description PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
swissprot
ID Q43291
description 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2
trembl
ID A0A067G5K5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031165mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17689: 9660-9837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001818_020 0.0 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
2 Hb_000970_010 0.0486612389 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
3 Hb_000545_150 0.0652294596 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_001584_070 0.0685016681 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_600 0.069112533 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
6 Hb_000007_100 0.0712382918 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
7 Hb_001638_260 0.0719394281 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
8 Hb_002296_060 0.0721222159 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
9 Hb_012573_070 0.0724445569 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002893_060 0.0749107148 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
11 Hb_000465_060 0.0749147279 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
12 Hb_002518_050 0.0749676653 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
13 Hb_000526_150 0.0752433678 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
14 Hb_003528_060 0.0776200516 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
15 Hb_001538_120 0.0777081103 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
16 Hb_001269_270 0.0783102221 - - 60S ribosomal protein L27B [Hevea brasiliensis]
17 Hb_000580_080 0.0787773615 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
18 Hb_001824_070 0.0790529461 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
19 Hb_008173_090 0.0792807304 - - glutathione peroxidase, putative [Ricinus communis]
20 Hb_000926_300 0.0794349596 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001818_020 Hb_001818_020 Hb_000970_010 Hb_000970_010 Hb_001818_020--Hb_000970_010 Hb_000545_150 Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_000970_010--Hb_001584_070 Hb_000970_010--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_000545_150--Hb_012573_070 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_000545_150--Hb_001638_260 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_000134_330 Hb_000134_330 Hb_000025_600--Hb_000134_330 Hb_002296_060 Hb_002296_060 Hb_000025_600--Hb_002296_060 Hb_001268_140 Hb_001268_140 Hb_000025_600--Hb_001268_140 Hb_005701_020 Hb_005701_020 Hb_000025_600--Hb_005701_020 Hb_001300_270 Hb_001300_270 Hb_000025_600--Hb_001300_270 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
722.164 242.015 295.252 302.534 720.892 727.005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1087.78 1853.45 626.717 427.575 150.955

CAGE analysis