Hb_002296_060

Information

Type -
Description -
Location Contig2296: 59022-66060
Sequence    

Annotation

kegg
ID mdm:103440218
description cytoplasmic tRNA 2-thiolation protein 1
nr
ID XP_004291313.2
description PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
swissprot
ID O64862
description Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2
trembl
ID A0A0D2UQ45
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G189800 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cytoplasmic trna 2-thiolation protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002296_060 0.0 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
2 Hb_000134_330 0.0632841799 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
3 Hb_000025_600 0.0656223094 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
4 Hb_005701_020 0.0663799809 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
5 Hb_001818_020 0.0721222159 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
6 Hb_000970_010 0.0785238047 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_001300_270 0.0802915536 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
8 Hb_001538_120 0.0841293114 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
9 Hb_000684_090 0.0848399365 transcription factor TF Family: S1Fa-like -
10 Hb_001268_140 0.0854230564 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000417_110 0.0872957222 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
12 Hb_000798_030 0.0882240575 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
13 Hb_008173_090 0.0888434084 - - glutathione peroxidase, putative [Ricinus communis]
14 Hb_001235_190 0.0921725179 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
15 Hb_011465_040 0.0928957491 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
16 Hb_002205_080 0.0935687956 - - 40S ribosomal protein S26, putative [Ricinus communis]
17 Hb_004645_050 0.0936645679 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
18 Hb_007101_150 0.0939714451 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
19 Hb_001257_080 0.0942572103 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001828_090 0.0942873109 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002296_060 Hb_002296_060 Hb_000134_330 Hb_000134_330 Hb_002296_060--Hb_000134_330 Hb_000025_600 Hb_000025_600 Hb_002296_060--Hb_000025_600 Hb_005701_020 Hb_005701_020 Hb_002296_060--Hb_005701_020 Hb_001818_020 Hb_001818_020 Hb_002296_060--Hb_001818_020 Hb_000970_010 Hb_000970_010 Hb_002296_060--Hb_000970_010 Hb_001300_270 Hb_001300_270 Hb_002296_060--Hb_001300_270 Hb_001268_140 Hb_001268_140 Hb_000134_330--Hb_001268_140 Hb_000134_330--Hb_000025_600 Hb_000134_330--Hb_001300_270 Hb_000099_060 Hb_000099_060 Hb_000134_330--Hb_000099_060 Hb_008173_090 Hb_008173_090 Hb_000134_330--Hb_008173_090 Hb_000025_600--Hb_001818_020 Hb_000025_600--Hb_001268_140 Hb_000025_600--Hb_005701_020 Hb_000025_600--Hb_001300_270 Hb_011465_040 Hb_011465_040 Hb_005701_020--Hb_011465_040 Hb_005701_020--Hb_000134_330 Hb_000580_080 Hb_000580_080 Hb_005701_020--Hb_000580_080 Hb_005701_020--Hb_001818_020 Hb_001818_020--Hb_000970_010 Hb_000545_150 Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_000970_010--Hb_001584_070 Hb_000970_010--Hb_000545_150 Hb_001300_270--Hb_001268_140 Hb_007944_040 Hb_007944_040 Hb_001300_270--Hb_007944_040 Hb_155764_020 Hb_155764_020 Hb_001300_270--Hb_155764_020 Hb_000111_340 Hb_000111_340 Hb_001300_270--Hb_000111_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.789909 0.372459 0.397987 0.163471 0.935047 0.785628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43738 2.20014 0.854548 0.434156 0.216368

CAGE analysis