Hb_000580_080

Information

Type -
Description -
Location Contig580: 42283-44131
Sequence    

Annotation

kegg
ID cic:CICLE_v10022677mg
description hypothetical protein
nr
ID XP_006421743.1
description hypothetical protein CICLE_v10006145mg [Citrus clementina]
swissprot
ID P62302
description 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1
trembl
ID A0A067FDB2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031857mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49831: 42269-44049 , PASA_asmbl_49833: 42269-43967
cDNA
(Sanger)
(ID:Location)		 001_M19.ab1: 42269-44031 , 005_C21.ab1: 42280-44035 , 005_L07.ab1: 42304-44029 , 006_F11.ab1: 42269-44030 , 012_P01.ab1: 42272-43959 , 013_C22.ab1: 42269-43832 , 052_J19.ab1: 42269-43989

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_080 0.0 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
2 Hb_000465_060 0.0665433386 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
3 Hb_089839_020 0.0689034327 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
4 Hb_001824_070 0.0699910759 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
5 Hb_001584_070 0.0711574637 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001235_210 0.0737088461 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_001477_110 0.0743794522 - - prohibitin, putative [Ricinus communis]
8 Hb_012515_010 0.0785698029 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
9 Hb_001818_020 0.0787773615 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
10 Hb_005701_020 0.0796875771 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
11 Hb_000380_190 0.0818712117 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
12 Hb_023732_070 0.0831102406 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
13 Hb_005618_140 0.0836376474 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
14 Hb_005997_010 0.0836718067 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
15 Hb_171900_050 0.0848570873 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000227_230 0.0849573042 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
17 Hb_001383_060 0.085208094 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_003734_140 0.085430738 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011139_020 0.0864541649 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
20 Hb_000318_380 0.0870510262 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000580_080 Hb_000580_080 Hb_000465_060 Hb_000465_060 Hb_000580_080--Hb_000465_060 Hb_089839_020 Hb_089839_020 Hb_000580_080--Hb_089839_020 Hb_001824_070 Hb_001824_070 Hb_000580_080--Hb_001824_070 Hb_001584_070 Hb_001584_070 Hb_000580_080--Hb_001584_070 Hb_001235_210 Hb_001235_210 Hb_000580_080--Hb_001235_210 Hb_001477_110 Hb_001477_110 Hb_000580_080--Hb_001477_110 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_003734_140 Hb_003734_140 Hb_089839_020--Hb_003734_140 Hb_002713_070 Hb_002713_070 Hb_089839_020--Hb_002713_070 Hb_000227_230 Hb_000227_230 Hb_089839_020--Hb_000227_230 Hb_002925_030 Hb_002925_030 Hb_089839_020--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_089839_020--Hb_000136_170 Hb_001824_070--Hb_001477_110 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_001235_210--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_001235_210--Hb_004645_050 Hb_002311_350 Hb_002311_350 Hb_001235_210--Hb_002311_350 Hb_001235_210--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001235_210--Hb_000380_190 Hb_001477_110--Hb_000380_190 Hb_001477_110--Hb_002311_350 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.209 52.7 45.945 58.0844 164.948 265.388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
277.029 472.477 174.969 139.675 48.0476

CAGE analysis