Hb_002893_060

Information

Type transcription factor
Description TF Family: GNAT
Location Contig2893: 48890-51437
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26500g
description POPTRDRAFT_654093; hypothetical protein
nr
ID XP_012076638.1
description PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
swissprot
ID Q6GP53
description N-alpha-acetyltransferase 50 OS=Xenopus laevis GN=naa50 PE=2 SV=1
trembl
ID A0A067KBN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07207 PE=4 SV=1
Gene Ontology
ID GO:0008080
description n-alpha-acetyltransferase 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30269: 48895-51412 , PASA_asmbl_30270: 49241-49476 , PASA_asmbl_30272: 52105-52260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_060 0.0 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
2 Hb_000465_060 0.0644621982 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
3 Hb_003001_060 0.064515832 - - wound-responsive family protein [Populus trichocarpa]
4 Hb_000025_530 0.0721655949 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
5 Hb_023732_070 0.072677917 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
6 Hb_003878_190 0.0740005297 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
7 Hb_001824_070 0.0747289279 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
8 Hb_001818_020 0.0749107148 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
9 Hb_001377_150 0.0782705547 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
10 Hb_001540_010 0.0783186448 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
11 Hb_000933_180 0.0786290447 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
12 Hb_011805_080 0.0795628878 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
13 Hb_011360_140 0.081657956 - - 40S ribosomal protein S19, putative [Ricinus communis]
14 Hb_000970_010 0.0816692414 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
15 Hb_000545_150 0.0834233368 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
16 Hb_001828_090 0.0841384474 - - prohibitin, putative [Ricinus communis]
17 Hb_002477_240 0.0842173365 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
18 Hb_001477_110 0.0857545553 - - prohibitin, putative [Ricinus communis]
19 Hb_001279_070 0.0860896246 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
20 Hb_001584_070 0.0865243577 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002893_060 Hb_002893_060 Hb_000465_060 Hb_000465_060 Hb_002893_060--Hb_000465_060 Hb_003001_060 Hb_003001_060 Hb_002893_060--Hb_003001_060 Hb_000025_530 Hb_000025_530 Hb_002893_060--Hb_000025_530 Hb_023732_070 Hb_023732_070 Hb_002893_060--Hb_023732_070 Hb_003878_190 Hb_003878_190 Hb_002893_060--Hb_003878_190 Hb_001824_070 Hb_001824_070 Hb_002893_060--Hb_001824_070 Hb_001584_070 Hb_001584_070 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_000465_060--Hb_023732_070 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_001369_650 Hb_001369_650 Hb_003001_060--Hb_001369_650 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003001_060--Hb_000417_110 Hb_000531_020 Hb_000531_020 Hb_000025_530--Hb_000531_020 Hb_000260_080 Hb_000260_080 Hb_000025_530--Hb_000260_080 Hb_000703_140 Hb_000703_140 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_002477_240 Hb_002477_240 Hb_000025_530--Hb_002477_240 Hb_023732_070--Hb_000970_010 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_023732_070--Hb_001584_070 Hb_003878_190--Hb_001824_070 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_001824_070--Hb_009711_030 Hb_001824_070--Hb_001584_070 Hb_001824_070--Hb_000371_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.7021 11.4205 20.7627 12.1246 41.3667 53.342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.8827 92.1219 30.793 24.3194 9.40467

CAGE analysis