Hb_023732_070

Information

Type -
Description -
Location Contig23732: 71777-73350
Sequence    

Annotation

kegg
ID tcc:TCM_022507
description 60S acidic ribosomal protein P2-4
nr
ID XP_011044769.1
description PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
swissprot
ID Q9LXM8
description 60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1
trembl
ID A0A061F117
description 60S acidic ribosomal protein P2-4 OS=Theobroma cacao GN=TCM_022507 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24821: 71770-73366
cDNA
(Sanger)
(ID:Location)		 004_J05.ab1: 72783-72900 , 013_K24.ab1: 71982-73241 , 014_O17.ab1: 71982-73300 , 015_H15.ab1: 71982-73259 , 018_I12.ab1: 71981-73335 , 032_D13.ab1: 71983-73336 , 034_P23.ab1: 71780-73259 , 037_L17.ab1: 71777-73300 , 043_M19.ab1: 71770-73285 , 043_N20.ab1: 71782-73255 , 047_N12.ab1: 71773-73263 , 048_D19.ab1: 71983-73366 , 049_C01.ab1: 71774-73270

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023732_070 0.0 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
2 Hb_000465_060 0.0588808076 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
3 Hb_000970_010 0.0663642584 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
4 Hb_001824_070 0.0680536942 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
5 Hb_000444_050 0.0696334568 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
6 Hb_000371_080 0.0713567614 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
7 Hb_001584_070 0.072673298 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002893_060 0.072677917 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
9 Hb_000380_190 0.0754679302 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
10 Hb_001477_110 0.0767839428 - - prohibitin, putative [Ricinus communis]
11 Hb_001252_110 0.0774737622 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
12 Hb_018133_060 0.0785961479 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
13 Hb_009711_030 0.078933068 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
14 Hb_002311_350 0.0793666672 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
15 Hb_000613_140 0.079372916 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
16 Hb_002307_030 0.0794936412 - - 40S ribosomal protein S15D [Hevea brasiliensis]
17 Hb_011794_070 0.0810175237 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
18 Hb_012515_010 0.0830358389 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
19 Hb_000580_080 0.0831102406 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
20 Hb_001383_060 0.0831251243 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_023732_070 Hb_023732_070 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_001824_070 Hb_001824_070 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_000465_060--Hb_001824_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_001824_070--Hb_000371_080 Hb_000087_020 Hb_000087_020 Hb_000444_050--Hb_000087_020 Hb_000205_270 Hb_000205_270 Hb_000444_050--Hb_000205_270 Hb_000086_070 Hb_000086_070 Hb_000444_050--Hb_000086_070 Hb_005997_010 Hb_005997_010 Hb_000444_050--Hb_005997_010 Hb_000329_310 Hb_000329_310 Hb_000444_050--Hb_000329_310 Hb_005686_110 Hb_005686_110 Hb_000371_080--Hb_005686_110 Hb_000371_080--Hb_009711_030 Hb_022250_040 Hb_022250_040 Hb_000371_080--Hb_022250_040 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_000371_080--Hb_005997_010 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1290.99 432.947 391.448 384.047 810.409 1476.18
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1503.87 2210.27 1087.49 595.698 216.033

CAGE analysis