Hb_000087_020

Information

Type -
Description -
Location Contig87: 28766-34324
Sequence    

Annotation

kegg
ID pop:POPTR_0019s07680g
description hypothetical protein
nr
ID XP_012090900.1
description PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
swissprot
ID Q9Y3E5
description Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1
trembl
ID A0A067JD80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00549 PE=4 SV=1
Gene Ontology
ID GO:0004045
description peptidyl-trna hydrolase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61125: 28767-34251 , PASA_asmbl_61126: 33414-34290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_020 0.0 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
2 Hb_000024_080 0.04323019 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
3 Hb_000444_050 0.0574524582 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
4 Hb_005398_030 0.057733736 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
5 Hb_004032_100 0.0604822052 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
6 Hb_005997_010 0.0637571128 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
7 Hb_000751_130 0.0639548922 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
8 Hb_000172_030 0.0681664419 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_000787_140 0.0720761826 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
10 Hb_001718_100 0.0760479243 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
11 Hb_000676_290 0.0765806238 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
12 Hb_005686_110 0.0768300474 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
13 Hb_000274_020 0.0787423273 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
14 Hb_003927_130 0.0788168192 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
15 Hb_000024_030 0.0799418009 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
16 Hb_000086_070 0.0801307605 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
17 Hb_001691_210 0.0805693122 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
18 Hb_001829_060 0.0820882912 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
19 Hb_000230_540 0.0824382577 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
20 Hb_002078_450 0.0834836241 - - nuclear transport factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000087_020 Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_000087_020--Hb_000024_080 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_004032_100 Hb_004032_100 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_000024_080--Hb_004032_100 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_000024_080--Hb_005398_030 Hb_000205_270 Hb_000205_270 Hb_000444_050--Hb_000205_270 Hb_000086_070 Hb_000086_070 Hb_000444_050--Hb_000086_070 Hb_000444_050--Hb_005997_010 Hb_023732_070 Hb_023732_070 Hb_000444_050--Hb_023732_070 Hb_000329_310 Hb_000329_310 Hb_000444_050--Hb_000329_310 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_001235_070 Hb_001235_070 Hb_005398_030--Hb_001235_070 Hb_005398_030--Hb_000676_290 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_003020_230 Hb_003020_230 Hb_005997_010--Hb_003020_230 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_009954_040 Hb_009954_040 Hb_005997_010--Hb_009954_040 Hb_001824_070 Hb_001824_070 Hb_005997_010--Hb_001824_070 Hb_000371_080 Hb_000371_080 Hb_005997_010--Hb_000371_080 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8431 8.74735 9.28082 20.9959 22.3907 55.7737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.976 61.8969 44.1077 19.4675 11.1701

CAGE analysis