Hb_000046_110

Information

Type -
Description -
Location Contig46: 90839-92231
Sequence    

Annotation

kegg
ID rcu:RCOM_0679160
description structural constituent of ribosome, putative
nr
ID XP_012069438.1
description PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
swissprot
ID B6IN38
description 50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1
trembl
ID A0A067L6B4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02043 PE=3 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein l33 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43609: 91107-92130 , PASA_asmbl_43610: 84238-92252 , PASA_asmbl_43612: 91122-92224 , PASA_asmbl_43613: 91144-91464
cDNA
(Sanger)
(ID:Location)		 002_B02.ab1: 91122-92224 , 008_B04.ab1: 90571-91916 , 022_C01.ab1: 91107-91728 , 039_L10r.ab1: 84238-90891 , 046_M16.ab1: 91121-92067 , 051_C07.ab1: 91066-92068 , 051_J15.ab1: 91122-92139

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_110 0.0 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
2 Hb_001109_020 0.0502126166 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001829_060 0.0548824685 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_000751_130 0.0649053418 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
5 Hb_008311_010 0.0724547397 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
6 Hb_003632_010 0.0734505277 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003927_130 0.0754700256 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
8 Hb_000001_050 0.0758194148 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
9 Hb_001258_080 0.0764246394 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
10 Hb_000205_270 0.0777777405 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
11 Hb_000963_180 0.0788647429 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
12 Hb_000274_020 0.0795446745 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
13 Hb_000086_070 0.0796108654 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
14 Hb_029866_040 0.0809667356 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
15 Hb_009666_040 0.0810784998 - - glutathione transferase, putative [Ricinus communis]
16 Hb_000377_060 0.0812668234 - - ARF GTPase activator, putative [Ricinus communis]
17 Hb_000172_030 0.0829595176 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
18 Hb_001141_280 0.0831312189 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
19 Hb_001862_100 0.0831886406 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
20 Hb_001718_100 0.0836412113 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_110 Hb_000046_110 Hb_001109_020 Hb_001109_020 Hb_000046_110--Hb_001109_020 Hb_001829_060 Hb_001829_060 Hb_000046_110--Hb_001829_060 Hb_000751_130 Hb_000751_130 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_003927_130 Hb_003927_130 Hb_000046_110--Hb_003927_130 Hb_001109_020--Hb_001829_060 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_001829_060--Hb_000751_130 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000751_130--Hb_004032_100 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030 Hb_000377_060 Hb_000377_060 Hb_008311_010--Hb_000377_060 Hb_000001_050 Hb_000001_050 Hb_008311_010--Hb_000001_050 Hb_000836_070 Hb_000836_070 Hb_008311_010--Hb_000836_070 Hb_004899_320 Hb_004899_320 Hb_008311_010--Hb_004899_320 Hb_008311_010--Hb_001109_020 Hb_006117_070 Hb_006117_070 Hb_003632_010--Hb_006117_070 Hb_003632_010--Hb_001109_020 Hb_002027_210 Hb_002027_210 Hb_003632_010--Hb_002027_210 Hb_003455_040 Hb_003455_040 Hb_003632_010--Hb_003455_040 Hb_003632_010--Hb_000377_060 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_003927_130--Hb_000086_070 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_003927_130--Hb_000883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.1693 13.8736 13.1962 40.5971 50.6594 92.4563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.945 140.993 132.357 30.4069 22.1616

CAGE analysis