Hb_008311_010

Information

Type -
Description -
Location Contig8311: 8679-17818
Sequence    

Annotation

kegg
ID crb:CARUB_v10003781mg
description hypothetical protein
nr
ID XP_006290120.1
description hypothetical protein CARUB_v10003781mg [Capsella rubella]
swissprot
ID P35055
description Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1
trembl
ID A0A0D9W9A9
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0009570
description coproporphyrinogen iii oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59824: 8707-10217 , PASA_asmbl_59825: 10784-11030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008311_010 0.0 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
2 Hb_000046_110 0.0724547397 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
3 Hb_000377_060 0.0791498777 - - ARF GTPase activator, putative [Ricinus communis]
4 Hb_000001_050 0.0806167034 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
5 Hb_000836_070 0.0844117739 - - protein binding protein, putative [Ricinus communis]
6 Hb_004899_320 0.0858671603 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
7 Hb_001109_020 0.0871057899 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000883_050 0.09032193 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
9 Hb_003632_010 0.0946915945 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001677_110 0.0958642879 - - Protein YIPF1, putative [Ricinus communis]
11 Hb_002527_070 0.0964037411 - - axonemal dynein light chain, putative [Ricinus communis]
12 Hb_000205_270 0.0968999217 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
13 Hb_002027_110 0.0972964735 - - PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas]
14 Hb_001829_060 0.0978623918 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
15 Hb_001718_100 0.0982243834 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
16 Hb_001427_120 0.0987110592 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
17 Hb_000956_010 0.0994834241 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
18 Hb_000975_300 0.0999244857 - - Rab2 [Hevea brasiliensis]
19 Hb_071736_020 0.1001152427 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
20 Hb_003927_130 0.1006675885 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]

Gene co-expression network

sample Hb_008311_010 Hb_008311_010 Hb_000046_110 Hb_000046_110 Hb_008311_010--Hb_000046_110 Hb_000377_060 Hb_000377_060 Hb_008311_010--Hb_000377_060 Hb_000001_050 Hb_000001_050 Hb_008311_010--Hb_000001_050 Hb_000836_070 Hb_000836_070 Hb_008311_010--Hb_000836_070 Hb_004899_320 Hb_004899_320 Hb_008311_010--Hb_004899_320 Hb_001109_020 Hb_001109_020 Hb_008311_010--Hb_001109_020 Hb_000046_110--Hb_001109_020 Hb_001829_060 Hb_001829_060 Hb_000046_110--Hb_001829_060 Hb_000751_130 Hb_000751_130 Hb_000046_110--Hb_000751_130 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_003927_130 Hb_003927_130 Hb_000046_110--Hb_003927_130 Hb_000377_060--Hb_001109_020 Hb_029866_040 Hb_029866_040 Hb_000377_060--Hb_029866_040 Hb_011381_100 Hb_011381_100 Hb_000377_060--Hb_011381_100 Hb_003018_190 Hb_003018_190 Hb_000377_060--Hb_003018_190 Hb_000377_060--Hb_003632_010 Hb_000001_050--Hb_029866_040 Hb_000001_050--Hb_000046_110 Hb_071736_020 Hb_071736_020 Hb_000001_050--Hb_071736_020 Hb_001677_110 Hb_001677_110 Hb_000001_050--Hb_001677_110 Hb_000260_120 Hb_000260_120 Hb_000001_050--Hb_000260_120 Hb_005488_010 Hb_005488_010 Hb_000836_070--Hb_005488_010 Hb_000836_070--Hb_004899_320 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_010710_040 Hb_010710_040 Hb_000836_070--Hb_010710_040 Hb_000836_070--Hb_003018_190 Hb_004899_320--Hb_005488_010 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_000956_010 Hb_000956_010 Hb_004899_320--Hb_000956_010 Hb_000329_040 Hb_000329_040 Hb_004899_320--Hb_000329_040 Hb_001109_020--Hb_001829_060 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.61008 0.928579 1.14764 1.98852 3.27622 5.7247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94745 7.46765 8.89787 1.05664 0.754174

CAGE analysis