Hb_001677_110

Information

Type -
Description -
Location Contig1677: 77362-81885
Sequence    

Annotation

kegg
ID rcu:RCOM_1482370
description Protein YIPF1, putative
nr
ID XP_002524232.1
description Protein YIPF1, putative [Ricinus communis]
swissprot
ID Q54TS4
description Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1
trembl
ID B9SE13
description Protein YIPF OS=Ricinus communis GN=RCOM_1482370 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein yipf1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15565: 77364-81764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001677_110 0.0 - - Protein YIPF1, putative [Ricinus communis]
2 Hb_026988_020 0.0862372813 - - outward rectifying K+ channel [Hevea brasiliensis]
3 Hb_002352_010 0.0879737817 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
4 Hb_001473_130 0.0887657016 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
5 Hb_000001_050 0.0954878769 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
6 Hb_008311_010 0.0958642879 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
7 Hb_002716_070 0.0963765717 - - PREDICTED: protein ABIL2 [Jatropha curcas]
8 Hb_001366_200 0.0964367476 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000983_100 0.096849474 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
10 Hb_071736_020 0.0987303061 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
11 Hb_002527_070 0.098822134 - - axonemal dynein light chain, putative [Ricinus communis]
12 Hb_000427_110 0.1009183304 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
13 Hb_001718_100 0.1024171978 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
14 Hb_001811_020 0.1027229608 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002498_100 0.1066069802 - - bcr-associated protein, bap, putative [Ricinus communis]
16 Hb_092100_020 0.1071360734 - - strictosidine synthase, putative [Ricinus communis]
17 Hb_002539_080 0.1071978356 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
18 Hb_001427_120 0.107627004 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_000956_010 0.1082317532 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
20 Hb_001584_300 0.1084721797 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001677_110 Hb_001677_110 Hb_026988_020 Hb_026988_020 Hb_001677_110--Hb_026988_020 Hb_002352_010 Hb_002352_010 Hb_001677_110--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_001677_110--Hb_001473_130 Hb_000001_050 Hb_000001_050 Hb_001677_110--Hb_000001_050 Hb_008311_010 Hb_008311_010 Hb_001677_110--Hb_008311_010 Hb_002716_070 Hb_002716_070 Hb_001677_110--Hb_002716_070 Hb_000983_100 Hb_000983_100 Hb_026988_020--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_026988_020--Hb_001366_230 Hb_000861_040 Hb_000861_040 Hb_026988_020--Hb_000861_040 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_002352_010--Hb_001473_130 Hb_002527_070 Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_002352_010--Hb_000427_110 Hb_002326_030 Hb_002326_030 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_001473_130--Hb_000983_100 Hb_001473_130--Hb_002326_030 Hb_001473_130--Hb_002527_070 Hb_001473_130--Hb_000427_110 Hb_029866_040 Hb_029866_040 Hb_000001_050--Hb_029866_040 Hb_000046_110 Hb_000046_110 Hb_000001_050--Hb_000046_110 Hb_071736_020 Hb_071736_020 Hb_000001_050--Hb_071736_020 Hb_000001_050--Hb_008311_010 Hb_000260_120 Hb_000260_120 Hb_000001_050--Hb_000260_120 Hb_008311_010--Hb_000046_110 Hb_000377_060 Hb_000377_060 Hb_008311_010--Hb_000377_060 Hb_000836_070 Hb_000836_070 Hb_008311_010--Hb_000836_070 Hb_004899_320 Hb_004899_320 Hb_008311_010--Hb_004899_320 Hb_001109_020 Hb_001109_020 Hb_008311_010--Hb_001109_020 Hb_000170_010 Hb_000170_010 Hb_002716_070--Hb_000170_010 Hb_003175_040 Hb_003175_040 Hb_002716_070--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_002716_070--Hb_004837_140 Hb_002028_130 Hb_002028_130 Hb_002716_070--Hb_002028_130 Hb_001718_100 Hb_001718_100 Hb_002716_070--Hb_001718_100 Hb_000205_270 Hb_000205_270 Hb_002716_070--Hb_000205_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.6212 8.75898 8.84227 34.2607 77.6185 99.3843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.66 100.732 162.851 24.9687 13.5891

CAGE analysis