Hb_003175_040

Information

Type -
Description -
Location Contig3175: 28829-35537
Sequence    

Annotation

kegg
ID rcu:RCOM_0903260
description 26S protease regulatory subunit, putative (EC:3.6.4.3)
nr
ID XP_012091285.1
description PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
swissprot
ID Q8TX03
description Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3 SV=1
trembl
ID A0A067JAA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21167 PE=3 SV=1
Gene Ontology
ID GO:0005524
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33441: 32743-33066 , PASA_asmbl_33442: 29005-33754 , PASA_asmbl_33443: 32201-32527 , PASA_asmbl_33444: 33761-33998 , PASA_asmbl_33445: 34022-34129 , PASA_asmbl_33446: 34742-35106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_040 0.0 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
2 Hb_004108_230 0.057318554 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
3 Hb_003408_020 0.0604057065 - - hypothetical protein RCOM_0453040 [Ricinus communis]
4 Hb_002918_200 0.0624191826 - - -
5 Hb_004837_140 0.0642434999 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
6 Hb_001691_210 0.0701658648 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
7 Hb_002716_070 0.0743281061 - - PREDICTED: protein ABIL2 [Jatropha curcas]
8 Hb_000170_010 0.0749911121 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_005432_030 0.0752792947 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
10 Hb_003927_130 0.0754541161 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
11 Hb_000061_320 0.0757646743 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
12 Hb_000834_270 0.0759100908 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
13 Hb_000089_160 0.0770674677 - - 60S ribosomal protein L5B [Hevea brasiliensis]
14 Hb_012338_010 0.0796133615 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007479_020 0.0800037326 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
16 Hb_000496_060 0.0806502389 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
17 Hb_021650_030 0.0807230976 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
18 Hb_044662_070 0.0809852899 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
19 Hb_005997_010 0.0810086115 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
20 Hb_003020_230 0.0825142486 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]

Gene co-expression network

sample Hb_003175_040 Hb_003175_040 Hb_004108_230 Hb_004108_230 Hb_003175_040--Hb_004108_230 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_002918_200 Hb_002918_200 Hb_003175_040--Hb_002918_200 Hb_004837_140 Hb_004837_140 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_000922_270 Hb_000922_270 Hb_003408_020--Hb_000922_270 Hb_000220_050 Hb_000220_050 Hb_003408_020--Hb_000220_050 Hb_003408_020--Hb_044662_070 Hb_001863_480 Hb_001863_480 Hb_003408_020--Hb_001863_480 Hb_002527_070 Hb_002527_070 Hb_003408_020--Hb_002527_070 Hb_002918_200--Hb_004837_140 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_004837_140--Hb_000170_010 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_000089_160 Hb_000089_160 Hb_001691_210--Hb_000089_160 Hb_001718_100 Hb_001718_100 Hb_001691_210--Hb_001718_100 Hb_001691_210--Hb_005997_010 Hb_003020_230 Hb_003020_230 Hb_001691_210--Hb_003020_230 Hb_000205_270 Hb_000205_270 Hb_001691_210--Hb_000205_270 Hb_002716_070--Hb_000170_010 Hb_002716_070--Hb_004837_140 Hb_002028_130 Hb_002028_130 Hb_002716_070--Hb_002028_130 Hb_002716_070--Hb_001718_100 Hb_002716_070--Hb_000205_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0571 3.95722 6.82314 6.50199 14.9305 21.838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.7289 33.7339 30.0123 11.8038 6.63848

CAGE analysis