Hb_000922_270

Information

Type -
Description -
Location Contig922: 236971-239870
Sequence    

Annotation

kegg
ID rcu:RCOM_1510480
description nitrogen fixation protein nifu, putative
nr
ID ADM67612.1
description iron-sulfur cluster scaffold protein [Hevea brasiliensis]
swissprot
ID O49627
description Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1
trembl
ID I6LM37
description Iron-sulfur cluster scaffold protein OS=Hevea brasiliensis GN=ISU1 PE=2 SV=1
Gene Ontology
ID GO:0005506
description iron-sulfur cluster assembly protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62496: 237148-239876
cDNA
(Sanger)
(ID:Location)		 004_O20.ab1: 237209-239877 , 014_N17.ab1: 237281-239875 , 015_B18.ab1: 237341-239883 , 023_P01.ab1: 237289-239875 , 030_F03.ab1: 237388-239875 , 052_H03.ab1: 237287-239876

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_270 0.0 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
2 Hb_003408_020 0.0659469018 - - hypothetical protein RCOM_0453040 [Ricinus communis]
3 Hb_007666_020 0.076741848 - - alkaline phytoceramidase, putative [Ricinus communis]
4 Hb_010172_070 0.0769515901 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
5 Hb_001711_030 0.0805597866 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
6 Hb_000051_040 0.0824675172 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
7 Hb_014720_080 0.0837787184 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
8 Hb_000086_570 0.0839808713 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
9 Hb_157022_020 0.0870123502 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
10 Hb_009404_020 0.08709053 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002540_030 0.0884719189 - - hypothetical protein 32 [Hevea brasiliensis]
12 Hb_001912_010 0.0920399307 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
13 Hb_003175_040 0.0920870893 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
14 Hb_044662_070 0.0938166278 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
15 Hb_002411_200 0.0938280066 - - conserved hypothetical protein [Ricinus communis]
16 Hb_021650_030 0.0946236151 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_002282_020 0.0949510692 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
18 Hb_002527_070 0.0957061127 - - axonemal dynein light chain, putative [Ricinus communis]
19 Hb_007924_020 0.0965689885 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_000622_040 0.0970532802 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000922_270 Hb_000922_270 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_003175_040 Hb_003175_040 Hb_003408_020--Hb_003175_040 Hb_000220_050 Hb_000220_050 Hb_003408_020--Hb_000220_050 Hb_044662_070 Hb_044662_070 Hb_003408_020--Hb_044662_070 Hb_001863_480 Hb_001863_480 Hb_003408_020--Hb_001863_480 Hb_002527_070 Hb_002527_070 Hb_003408_020--Hb_002527_070 Hb_005618_040 Hb_005618_040 Hb_007666_020--Hb_005618_040 Hb_002540_030 Hb_002540_030 Hb_007666_020--Hb_002540_030 Hb_007666_020--Hb_002527_070 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200 Hb_007479_020 Hb_007479_020 Hb_010172_070--Hb_007479_020 Hb_001912_010 Hb_001912_010 Hb_010172_070--Hb_001912_010 Hb_001722_100 Hb_001722_100 Hb_010172_070--Hb_001722_100 Hb_010172_070--Hb_014720_080 Hb_001257_080 Hb_001257_080 Hb_010172_070--Hb_001257_080 Hb_001711_030--Hb_001863_480 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_001711_030--Hb_002527_070 Hb_001439_170 Hb_001439_170 Hb_001711_030--Hb_001439_170 Hb_007021_020 Hb_007021_020 Hb_000051_040--Hb_007021_020 Hb_000261_460 Hb_000261_460 Hb_000051_040--Hb_000261_460 Hb_009404_020 Hb_009404_020 Hb_000051_040--Hb_009404_020 Hb_000051_040--Hb_003408_020 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
336.398 78.3263 57.3775 85.7764 262.771 237.615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
709.415 495.581 472.55 163.82 49.2252

CAGE analysis