Hb_001257_080

Information

Type -
Description -
Location Contig1257: 137867-140928
Sequence    

Annotation

kegg
ID rcu:RCOM_1282610
description hypothetical protein
nr
ID XP_002523866.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCZ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282610 PE=4 SV=1
Gene Ontology
ID GO:0003924
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07846: 138010-140857 , PASA_asmbl_07847: 138423-138940
cDNA
(Sanger)
(ID:Location)		 050_A08.ab1: 140429-140781

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002205_080 0.0569117703 - - 40S ribosomal protein S26, putative [Ricinus communis]
3 Hb_007741_050 0.0653821138 - - vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_007101_150 0.069906029 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
5 Hb_002529_100 0.0738653565 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
6 Hb_022250_040 0.0751285429 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
7 Hb_000798_030 0.0757794575 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
8 Hb_000200_100 0.0758138478 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
9 Hb_007479_020 0.0759429 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
10 Hb_010172_070 0.0772683434 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
11 Hb_001722_100 0.077761138 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000056_340 0.0783382952 - - 60S ribosomal protein L34A [Hevea brasiliensis]
13 Hb_001246_090 0.0785373799 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
14 Hb_004204_120 0.078778287 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
15 Hb_008173_090 0.0790162783 - - glutathione peroxidase, putative [Ricinus communis]
16 Hb_004108_230 0.0812589499 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
17 Hb_009711_030 0.0815703201 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
18 Hb_001235_190 0.0817347758 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
19 Hb_023386_080 0.0820773236 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
20 Hb_002030_040 0.082407237 - - hypothetical protein JCGZ_18677 [Jatropha curcas]

Gene co-expression network

sample Hb_001257_080 Hb_001257_080 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_007741_050 Hb_007741_050 Hb_001257_080--Hb_007741_050 Hb_007101_150 Hb_007101_150 Hb_001257_080--Hb_007101_150 Hb_002529_100 Hb_002529_100 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_000798_030 Hb_000798_030 Hb_001257_080--Hb_000798_030 Hb_000270_270 Hb_000270_270 Hb_002205_080--Hb_000270_270 Hb_001379_060 Hb_001379_060 Hb_002205_080--Hb_001379_060 Hb_002205_080--Hb_007101_150 Hb_001828_090 Hb_001828_090 Hb_002205_080--Hb_001828_090 Hb_003018_200 Hb_003018_200 Hb_002205_080--Hb_003018_200 Hb_007741_050--Hb_007101_150 Hb_007741_050--Hb_000798_030 Hb_007479_020 Hb_007479_020 Hb_007741_050--Hb_007479_020 Hb_000970_010 Hb_000970_010 Hb_007741_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_007741_050--Hb_001818_020 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001512_070 Hb_001512_070 Hb_007101_150--Hb_001512_070 Hb_007101_150--Hb_003018_200 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_002529_100--Hb_000056_340 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_000417_110 Hb_000417_110 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000634_050 Hb_000634_050 Hb_000798_030--Hb_000634_050 Hb_000798_030--Hb_000045_190 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.3 23.95 28.3869 25.6678 73.9224 57.5244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.207 124.363 76.9816 33.9488 10.6881

CAGE analysis