Hb_001828_090

Information

Type -
Description -
Location Contig1828: 88351-91945
Sequence    

Annotation

kegg
ID rcu:RCOM_1679310
description prohibitin, putative
nr
ID XP_002509571.1
description prohibitin, putative [Ricinus communis]
swissprot
ID O04331
description Prohibitin-3, mitochondrial OS=Arabidopsis thaliana GN=PHB3 PE=1 SV=1
trembl
ID B9RBN7
description Prohibitin, putative OS=Ricinus communis GN=RCOM_1679310 PE=4 SV=1
Gene Ontology
ID GO:0005730
description prohibitin- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17808: 88383-91915 , PASA_asmbl_17809: 92126-92609
cDNA
(Sanger)
(ID:Location)		 013_E15.ab1: 90592-91913 , 048_M12.ab1: 88637-90989

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_090 0.0 - - prohibitin, putative [Ricinus communis]
2 Hb_007101_150 0.0538517445 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
3 Hb_000221_220 0.0609597073 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
4 Hb_011360_140 0.061898569 - - 40S ribosomal protein S19, putative [Ricinus communis]
5 Hb_001379_060 0.0671629203 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
6 Hb_001512_070 0.071055942 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
7 Hb_000684_090 0.073251498 transcription factor TF Family: S1Fa-like -
8 Hb_000392_270 0.073487004 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
9 Hb_000473_040 0.0736889263 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
10 Hb_000056_340 0.0745806056 - - 60S ribosomal protein L34A [Hevea brasiliensis]
11 Hb_000977_080 0.0774510076 - - type II inositol 5-phosphatase, putative [Ricinus communis]
12 Hb_003018_200 0.078549848 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
13 Hb_003878_190 0.0789754036 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
14 Hb_001369_650 0.0796490337 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
15 Hb_003939_080 0.0803074504 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000015_080 0.0805262948 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
17 Hb_002603_100 0.0805753683 - - ATATH9, putative [Ricinus communis]
18 Hb_011571_020 0.0807629882 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
19 Hb_000531_020 0.0808564554 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
20 Hb_002205_080 0.0814254601 - - 40S ribosomal protein S26, putative [Ricinus communis]

Gene co-expression network

sample Hb_001828_090 Hb_001828_090 Hb_007101_150 Hb_007101_150 Hb_001828_090--Hb_007101_150 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001512_070 Hb_001512_070 Hb_001828_090--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001828_090--Hb_000684_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_007101_150--Hb_001512_070 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_002603_100 Hb_002603_100 Hb_000221_220--Hb_002603_100 Hb_007426_230 Hb_007426_230 Hb_000221_220--Hb_007426_230 Hb_012762_050 Hb_012762_050 Hb_000221_220--Hb_012762_050 Hb_004195_160 Hb_004195_160 Hb_000221_220--Hb_004195_160 Hb_011571_020 Hb_011571_020 Hb_000221_220--Hb_011571_020 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_001379_060--Hb_007101_150 Hb_002205_080 Hb_002205_080 Hb_001379_060--Hb_002205_080 Hb_001379_060--Hb_001512_070 Hb_001379_060--Hb_000684_090 Hb_000270_270 Hb_000270_270 Hb_001379_060--Hb_000270_270 Hb_003939_080 Hb_003939_080 Hb_001512_070--Hb_003939_080 Hb_001512_070--Hb_012762_050 Hb_002868_010 Hb_002868_010 Hb_001512_070--Hb_002868_010 Hb_001512_070--Hb_000684_090 Hb_000684_090--Hb_000270_270 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_000684_090--Hb_011360_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.473 47.7313 53.5231 27.5063 124.841 114.577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.548 207.245 109.773 48.9783 17.2106

CAGE analysis