Hb_004195_160

Information

Type -
Description -
Location Contig4195: 158671-162381
Sequence    

Annotation

kegg
ID rcu:RCOM_0534160
description hypothetical protein
nr
ID XP_012072886.1
description PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S6A1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0534160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41428: 159114-160682 , PASA_asmbl_41429: 161391-161963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_160 0.0 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
2 Hb_007426_230 0.0386419776 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
3 Hb_000398_180 0.0535555312 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
4 Hb_001030_120 0.0536330219 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
5 Hb_001377_290 0.0611017564 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
6 Hb_006332_020 0.0618595247 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_002609_110 0.0644644231 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
8 Hb_003642_060 0.0646437894 - - hypothetical protein RCOM_1189860 [Ricinus communis]
9 Hb_028872_140 0.0650082411 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
10 Hb_000057_040 0.0692886208 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_168707_030 0.0703799919 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
12 Hb_001454_210 0.0707001194 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
13 Hb_000019_230 0.0713249982 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
14 Hb_000032_570 0.071405329 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
15 Hb_148912_010 0.0724118222 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000172_370 0.0726839561 - - -
17 Hb_002097_110 0.0737751642 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_003777_330 0.0743276729 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
19 Hb_000923_020 0.0743822332 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
20 Hb_000221_220 0.0748328525 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]

Gene co-expression network

sample Hb_004195_160 Hb_004195_160 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_007426_230--Hb_000398_180 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_000398_180--Hb_001377_290 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_001030_120--Hb_028872_140 Hb_001377_290--Hb_011689_080 Hb_003392_040 Hb_003392_040 Hb_001377_290--Hb_003392_040 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_002078_150 Hb_002078_150 Hb_001377_290--Hb_002078_150 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2572 4.9312 3.32294 4.58121 13.6552 15.4018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1463 15.1278 12.6596 5.40857 2.97812

CAGE analysis