Hb_182026_020

Information

Type -
Description -
Location Contig182026: 20327-21511
Sequence    

Annotation

kegg
ID rcu:RCOM_0342710
description hypothetical protein
nr
ID XP_012092514.1
description PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q9FF75
description Protein SAD1/UNC-84 domain protein 1 OS=Arabidopsis thaliana GN=SUN1 PE=1 SV=1
trembl
ID A0A067J9Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04204 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17720: 9428-21594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182026_020 0.0 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
2 Hb_002609_110 0.066950905 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
3 Hb_000418_100 0.0683620453 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
4 Hb_011918_080 0.0746750173 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
5 Hb_000556_080 0.0764988495 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
6 Hb_002686_270 0.0775364843 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010638_020 0.0785235008 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
8 Hb_001030_120 0.0792343586 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_002835_410 0.0793461107 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
10 Hb_001439_120 0.0854923002 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000049_040 0.0856452532 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
12 Hb_004195_160 0.0863877812 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
13 Hb_001135_160 0.0879917435 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
14 Hb_007426_230 0.0881379697 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
15 Hb_010863_080 0.0899651861 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
16 Hb_012340_010 0.0903266103 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
17 Hb_000617_020 0.0903328574 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
18 Hb_000386_040 0.0903718722 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_007558_140 0.0918300601 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
20 Hb_000186_240 0.0920923709 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_182026_020 Hb_182026_020 Hb_002609_110 Hb_002609_110 Hb_182026_020--Hb_002609_110 Hb_000418_100 Hb_000418_100 Hb_182026_020--Hb_000418_100 Hb_011918_080 Hb_011918_080 Hb_182026_020--Hb_011918_080 Hb_000556_080 Hb_000556_080 Hb_182026_020--Hb_000556_080 Hb_002686_270 Hb_002686_270 Hb_182026_020--Hb_002686_270 Hb_010638_020 Hb_010638_020 Hb_182026_020--Hb_010638_020 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_002609_110--Hb_000418_100 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_000418_100--Hb_000062_240 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_082609_020 Hb_082609_020 Hb_000418_100--Hb_082609_020 Hb_007558_140 Hb_007558_140 Hb_011918_080--Hb_007558_140 Hb_002477_160 Hb_002477_160 Hb_011918_080--Hb_002477_160 Hb_015306_020 Hb_015306_020 Hb_011918_080--Hb_015306_020 Hb_000110_160 Hb_000110_160 Hb_011918_080--Hb_000110_160 Hb_004046_010 Hb_004046_010 Hb_011918_080--Hb_004046_010 Hb_001329_300 Hb_001329_300 Hb_011918_080--Hb_001329_300 Hb_001135_160 Hb_001135_160 Hb_000556_080--Hb_001135_160 Hb_001439_120 Hb_001439_120 Hb_000556_080--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_000556_080--Hb_011224_080 Hb_000556_080--Hb_010638_020 Hb_012340_010 Hb_012340_010 Hb_000556_080--Hb_012340_010 Hb_002686_270--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_002686_270--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_002686_270--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_002686_270--Hb_000975_290 Hb_000152_140 Hb_000152_140 Hb_002686_270--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002686_270--Hb_001454_140 Hb_007575_040 Hb_007575_040 Hb_010638_020--Hb_007575_040 Hb_010638_020--Hb_001439_120 Hb_000186_240 Hb_000186_240 Hb_010638_020--Hb_000186_240 Hb_010638_020--Hb_011224_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.2742 14.7538 8.3343 22.7124 65.2353 61.1031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.8998 43.7044 62.0962 21.6916 8.10713

CAGE analysis