Hb_133271_020

Information

Type -
Description -
Location Contig133271: 21959-27968
Sequence    

Annotation

kegg
ID rcu:RCOM_1171660
description prohibitin, putative
nr
ID XP_002517841.1
description prohibitin, putative [Ricinus communis]
swissprot
ID O49460
description Prohibitin-1, mitochondrial OS=Arabidopsis thaliana GN=PHB1 PE=1 SV=1
trembl
ID B9RVS2
description Prohibitin, putative OS=Ricinus communis GN=RCOM_1171660 PE=4 SV=1
Gene Ontology
ID GO:0016020
description prohibitin- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09475: 22090-27869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133271_020 0.0 - - prohibitin, putative [Ricinus communis]
2 Hb_158092_070 0.0443727663 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
3 Hb_004662_030 0.0591175078 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
4 Hb_000975_290 0.0617065484 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
5 Hb_001030_120 0.0622839009 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_002686_270 0.0625957417 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004223_130 0.0697094513 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000032_570 0.0698593411 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
9 Hb_006447_010 0.0732350546 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
10 Hb_002097_110 0.0744216537 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_003086_020 0.074815242 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
12 Hb_003777_270 0.0763709048 - - 60S ribosomal protein L3B [Hevea brasiliensis]
13 Hb_022250_040 0.0773428727 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
14 Hb_000175_070 0.0780903005 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
15 Hb_002078_450 0.079754722 - - nuclear transport factor, putative [Ricinus communis]
16 Hb_015001_020 0.0801194877 - - PREDICTED: la-related protein 6B [Jatropha curcas]
17 Hb_118419_020 0.0805113494 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
18 Hb_003392_040 0.0814710624 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
19 Hb_009711_030 0.0825013621 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
20 Hb_002762_060 0.0827621999 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_133271_020 Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_001030_120 Hb_001030_120 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_158092_070--Hb_001030_120 Hb_158092_070--Hb_000975_290 Hb_002097_110 Hb_002097_110 Hb_004662_030--Hb_002097_110 Hb_009711_030 Hb_009711_030 Hb_004662_030--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020 Hb_022250_040 Hb_022250_040 Hb_004662_030--Hb_022250_040 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_000975_290--Hb_001030_120 Hb_000975_290--Hb_002686_270 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_002686_270--Hb_158092_070 Hb_000152_140 Hb_000152_140 Hb_002686_270--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002686_270--Hb_001454_140 Hb_000017_120 Hb_000017_120 Hb_004223_130--Hb_000017_120 Hb_004223_130--Hb_158092_070 Hb_001671_080 Hb_001671_080 Hb_004223_130--Hb_001671_080 Hb_004223_130--Hb_001030_120 Hb_002272_250 Hb_002272_250 Hb_004223_130--Hb_002272_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.382 34.7744 23.6206 41.1024 119.957 185.324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
155.304 144.134 126.617 70.9484 16.4347

CAGE analysis